Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 BNIP3P42-201ENST00000454982 569 ntBASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 COX5BP1-201ENST00000507622 393 ntBASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 BNIP3P29-201ENST00000598302 571 ntBASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 AC011447.5-201ENST00000616168 564 ntBASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 AL109954.1-202ENST00000564051 2148 ntBASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP4AQ9BY43 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 CLUHP2-201ENST00000426660 1303 ntBASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 REXO1L2P-201ENST00000425429 2069 ntBASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.33■□□□□ 0.69
CHMP4AQ9BY43 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 AL136309.1-201ENST00000403917 691 ntBASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 AL590640.2-201ENST00000457038 527 ntBASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 SLC9A7P1-202ENST00000556476 2239 ntBASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.33■□□□□ 0.68
CHMP4AQ9BY43 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 NORAD-201ENST00000565493 5339 ntBASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 CNN2P10-201ENST00000443067 918 ntBASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 AC106820.3-201ENST00000561653 397 ntBASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms