Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC012441.2-201ENST00000444843 739 ntBASIC14.65□□□□□ -0.06
VPS13AQ96RL7 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
VPS13AQ96RL7 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 AL137077.2-201ENST00000635124 1608 ntBASIC14.64□□□□□ -0.07
VPS13AQ96RL7 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 CTBP2P6-201ENST00000526402 1229 ntBASIC14.64□□□□□ -0.07
VPS13AQ96RL7 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.64□□□□□ -0.07
VPS13AQ96RL7 AC023090.2-201ENST00000625182 2110 ntBASIC14.64□□□□□ -0.07
VPS13AQ96RL7 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 NME4-203ENST00000397722 1232 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AL157407.1-201ENST00000435784 904 ntBASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AC092612.1-201ENST00000514501 998 ntBASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AC100827.2-201ENST00000563214 1194 ntBASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AP005264.6-204ENST00000588436 719 ntBASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AL592076.1-201ENST00000424448 303 ntBASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 DPY19L2P5-201ENST00000456300 331 ntBASIC14.63□□□□□ -0.07
VPS13AQ96RL7 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AC008536.3-201ENST00000623282 1599 ntBASIC14.63□□□□□ -0.07
VPS13AQ96RL7 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AC083801.1-201ENST00000491689 358 ntBASIC14.63□□□□□ -0.07
VPS13AQ96RL7 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 SRP14-204ENST00000558720 780 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS13AQ96RL7 AL353622.2-201ENST00000605846 425 ntBASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms