Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 SNHG9-202ENST00000564014 471 ntBASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 LINC00528-201ENST00000600723 2160 ntBASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 CBFB-203ENST00000561924 584 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AC051619.7-201ENST00000568314 623 ntBASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AC015911.4-201ENST00000588022 1070 ntBASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 TEX28P1-201ENST00000613479 1221 ntBASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 TEX28P2-201ENST00000617764 1221 ntBASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AC073592.8-201ENST00000624126 511 ntBASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AC007787.1-201ENST00000588095 1583 ntBASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 AC007686.3-201ENST00000619017 3487 ntBASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CCDC54Q8NEL0 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms