Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 SNX15-201ENST00000352068 771 ntTSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 MBP-201ENST00000354542 575 ntTSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 AC093909.3-201ENST00000504783 336 ntBASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 MRPL22P1-201ENST00000505398 616 ntBASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 AC007326.1-201ENST00000604539 458 ntBASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 AC006548.2-201ENST00000605217 529 ntBASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 AC011471.3-201ENST00000623576 402 ntBASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 ENPP7P8-202ENST00000527856 1345 ntBASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 AC005962.1-201ENST00000584100 773 ntBASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 HMGB1P24-201ENST00000611897 328 ntBASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SMC1BQ8NDV3 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 AC015909.3-201ENST00000572855 1794 ntBASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 AC023141.7-201ENST00000430646 407 ntBASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms