Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 AC127383.1-201ENST00000444697 1800 ntBASIC10.33□□□□□ -0.76
CSMD3Q7Z407 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 ORAOV1P1-201ENST00000503108 395 ntBASIC10.33□□□□□ -0.76
CSMD3Q7Z407 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 MIR2392-201ENST00000584881 84 ntBASIC10.33□□□□□ -0.76
CSMD3Q7Z407 DBP-202ENST00000593500 712 ntTSL 2 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 AC023090.2-201ENST00000625182 2110 ntBASIC10.33□□□□□ -0.76
CSMD3Q7Z407 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC10.33□□□□□ -0.76
CSMD3Q7Z407 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 BUD31-205ENST00000456893 512 ntTSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AC025183.3-201ENST00000623526 1482 ntBASIC10.32□□□□□ -0.76
CSMD3Q7Z407 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AL360270.3-201ENST00000609118 1348 ntBASIC10.32□□□□□ -0.76
CSMD3Q7Z407 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 FAS-202ENST00000352159 1722 ntTSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AL583805.1-201ENST00000391389 531 ntBASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AC004522.1-201ENST00000419978 654 ntBASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AC004837.1-201ENST00000446267 564 ntBASIC10.32□□□□□ -0.76
CSMD3Q7Z407 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 MIR3188-201ENST00000583494 85 ntBASIC10.32□□□□□ -0.76
CSMD3Q7Z407 BLK-205ENST00000529894 2017 ntTSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 COX20P1-201ENST00000366529 357 ntBASIC10.32□□□□□ -0.76
CSMD3Q7Z407 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AC012441.2-201ENST00000444843 739 ntBASIC10.32□□□□□ -0.76
CSMD3Q7Z407 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 AC009884.2-201ENST00000603110 324 ntBASIC10.32□□□□□ -0.76
CSMD3Q7Z407 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
CSMD3Q7Z407 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
CSMD3Q7Z407 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CSMD3Q7Z407 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CSMD3Q7Z407 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CSMD3Q7Z407 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CSMD3Q7Z407 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CSMD3Q7Z407 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC10.31□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 301.7 ms