Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SSRP1Q08945 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.67■□□□□ 0.42
SSRP1Q08945 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.67■□□□□ 0.42
SSRP1Q08945 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.67■□□□□ 0.42
SSRP1Q08945 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.66■□□□□ 0.42
SSRP1Q08945 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.66■□□□□ 0.42
SSRP1Q08945 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SSRP1Q08945 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.66■□□□□ 0.42
SSRP1Q08945 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SSRP1Q08945 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
SSRP1Q08945 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
SSRP1Q08945 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.66■□□□□ 0.42
SSRP1Q08945 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SSRP1Q08945 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.66■□□□□ 0.42
SSRP1Q08945 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SSRP1Q08945 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.66■□□□□ 0.42
SSRP1Q08945 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.66■□□□□ 0.42
SSRP1Q08945 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.66■□□□□ 0.42
SSRP1Q08945 AP005019.2-201ENST00000615104 511 ntBASIC17.66■□□□□ 0.42
SSRP1Q08945 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.66■□□□□ 0.42
SSRP1Q08945 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.66■□□□□ 0.42
SSRP1Q08945 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.66■□□□□ 0.42
SSRP1Q08945 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SSRP1Q08945 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 KRT8P14-201ENST00000414254 1442 ntBASIC17.65■□□□□ 0.42
SSRP1Q08945 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 ACKR1-201ENST00000368121 1240 ntBASIC17.65■□□□□ 0.42
SSRP1Q08945 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 KLF2P2-201ENST00000416807 1039 ntBASIC17.65■□□□□ 0.42
SSRP1Q08945 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.65■□□□□ 0.42
SSRP1Q08945 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.65■□□□□ 0.42
SSRP1Q08945 AP001063.1-201ENST00000568332 529 ntBASIC17.65■□□□□ 0.42
SSRP1Q08945 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.65■□□□□ 0.42
SSRP1Q08945 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SSRP1Q08945 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SSRP1Q08945 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
SSRP1Q08945 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SSRP1Q08945 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
SSRP1Q08945 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC17.64■□□□□ 0.42
SSRP1Q08945 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
SSRP1Q08945 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
SSRP1Q08945 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.64■□□□□ 0.42
SSRP1Q08945 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
SSRP1Q08945 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SSRP1Q08945 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SSRP1Q08945 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.64■□□□□ 0.41
SSRP1Q08945 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.64■□□□□ 0.41
SSRP1Q08945 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SSRP1Q08945 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.64■□□□□ 0.41
SSRP1Q08945 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.64■□□□□ 0.41
SSRP1Q08945 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.64■□□□□ 0.41
SSRP1Q08945 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SSRP1Q08945 AC027307.3-201ENST00000594262 1100 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms