Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
CDX1P47902 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
CDX1P47902 AL592424.1-201ENST00000563624 1536 ntBASIC12.56□□□□□ -0.4
CDX1P47902 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC12.56□□□□□ -0.4
CDX1P47902 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
CDX1P47902 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
CDX1P47902 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
CDX1P47902 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CDX1P47902 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC12.55□□□□□ -0.4
CDX1P47902 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
CDX1P47902 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
CDX1P47902 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.55□□□□□ -0.4
CDX1P47902 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.55□□□□□ -0.4
CDX1P47902 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC12.55□□□□□ -0.4
CDX1P47902 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC12.55□□□□□ -0.4
CDX1P47902 AC245100.5-201ENST00000452108 331 ntBASIC12.55□□□□□ -0.4
CDX1P47902 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.55□□□□□ -0.4
CDX1P47902 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 AC004890.2-204ENST00000481968 304 ntBASIC12.55□□□□□ -0.4
CDX1P47902 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.55□□□□□ -0.4
CDX1P47902 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.55□□□□□ -0.4
CDX1P47902 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 AL079307.3-201ENST00000556114 283 ntBASIC12.55□□□□□ -0.4
CDX1P47902 GREM1-201ENST00000560677 623 ntTSL 4 BASIC12.55□□□□□ -0.4
CDX1P47902 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.55□□□□□ -0.4
CDX1P47902 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC12.55□□□□□ -0.4
CDX1P47902 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC12.55□□□□□ -0.4
CDX1P47902 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 AJ011931.1-201ENST00000618749 2492 ntBASIC12.55□□□□□ -0.4
CDX1P47902 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 AC087499.5-201ENST00000452760 1342 ntBASIC12.55□□□□□ -0.4
CDX1P47902 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.55□□□□□ -0.4
CDX1P47902 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CDX1P47902 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
CDX1P47902 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
CDX1P47902 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC12.54□□□□□ -0.4
CDX1P47902 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC12.54□□□□□ -0.4
CDX1P47902 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CDX1P47902 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 CES1P1-201ENST00000421606 1704 ntBASIC12.54□□□□□ -0.4
CDX1P47902 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 AC067750.1-201ENST00000608826 6545 ntBASIC12.54□□□□□ -0.4
CDX1P47902 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
CDX1P47902 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CDX1P47902 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CDX1P47902 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
CDX1P47902 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms