Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC19.44■□□□□ 0.7
COL18A1P39060 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC19.44■□□□□ 0.7
COL18A1P39060 AC124068.2-201ENST00000569473 1109 ntBASIC19.44■□□□□ 0.7
COL18A1P39060 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC19.44■□□□□ 0.7
COL18A1P39060 RN7SL665P-201ENST00000578793 300 ntBASIC19.44■□□□□ 0.7
COL18A1P39060 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC19.44■□□□□ 0.7
COL18A1P39060 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC19.44■□□□□ 0.7
COL18A1P39060 MRPL37P1-201ENST00000592451 1337 ntBASIC19.44■□□□□ 0.7
COL18A1P39060 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL18A1P39060 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC19.44■□□□□ 0.7
COL18A1P39060 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC19.44■□□□□ 0.7
COL18A1P39060 STK16-203ENST00000409516 895 ntTSL 2 BASIC19.44■□□□□ 0.7
COL18A1P39060 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC19.44■□□□□ 0.7
COL18A1P39060 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC19.44■□□□□ 0.7
COL18A1P39060 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC19.44■□□□□ 0.7
COL18A1P39060 PSMD4P1-201ENST00000433951 1109 ntBASIC19.44■□□□□ 0.7
COL18A1P39060 PPOX-204ENST00000462866 473 ntTSL 5 BASIC19.44■□□□□ 0.7
COL18A1P39060 RNA5SP417-201ENST00000516459 108 ntBASIC19.44■□□□□ 0.7
COL18A1P39060 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC19.44■□□□□ 0.7
COL18A1P39060 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.44■□□□□ 0.7
COL18A1P39060 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL18A1P39060 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.43■□□□□ 0.7
COL18A1P39060 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 TMBIM7P-203ENST00000641617 1718 ntBASIC19.43■□□□□ 0.7
COL18A1P39060 AC139712.1-201ENST00000378256 1875 ntBASIC19.43■□□□□ 0.7
COL18A1P39060 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC19.43■□□□□ 0.7
COL18A1P39060 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC19.43■□□□□ 0.7
COL18A1P39060 DUX4L50-201ENST00000455245 715 ntBASIC19.43■□□□□ 0.7
COL18A1P39060 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC19.43■□□□□ 0.7
COL18A1P39060 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.43■□□□□ 0.7
COL18A1P39060 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.43■□□□□ 0.7
COL18A1P39060 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL18A1P39060 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC19.43■□□□□ 0.7
COL18A1P39060 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
COL18A1P39060 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC19.42■□□□□ 0.7
COL18A1P39060 KRT17P5-201ENST00000332088 839 ntBASIC19.42■□□□□ 0.7
COL18A1P39060 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
COL18A1P39060 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC19.42■□□□□ 0.7
COL18A1P39060 IDS-203ENST00000428056 1213 ntTSL 2 BASIC19.42■□□□□ 0.7
COL18A1P39060 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC19.42■□□□□ 0.7
COL18A1P39060 AC138701.2-201ENST00000553634 226 ntBASIC19.42■□□□□ 0.7
COL18A1P39060 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC19.42■□□□□ 0.7
COL18A1P39060 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC19.42■□□□□ 0.7
COL18A1P39060 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 AC092135.3-201ENST00000624151 1846 ntBASIC19.42■□□□□ 0.7
COL18A1P39060 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
COL18A1P39060 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
COL18A1P39060 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC19.42■□□□□ 0.7
COL18A1P39060 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
COL18A1P39060 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
COL18A1P39060 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.42■□□□□ 0.7
COL18A1P39060 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC19.42■□□□□ 0.7
COL18A1P39060 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.42■□□□□ 0.7
COL18A1P39060 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
COL18A1P39060 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL18A1P39060 ELP5-212ENST00000574255 671 ntTSL 2 BASIC19.42■□□□□ 0.7
COL18A1P39060 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC19.42■□□□□ 0.7
COL18A1P39060 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC19.42■□□□□ 0.7
COL18A1P39060 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC19.42■□□□□ 0.7
COL18A1P39060 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL18A1P39060 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.41■□□□□ 0.7
COL18A1P39060 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms