Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
MSX2P35548 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
MSX2P35548 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.6□□□□□ -0.07
MSX2P35548 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.6□□□□□ -0.07
MSX2P35548 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
MSX2P35548 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.6□□□□□ -0.07
MSX2P35548 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.6□□□□□ -0.07
MSX2P35548 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
MSX2P35548 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
MSX2P35548 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.6□□□□□ -0.07
MSX2P35548 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
MSX2P35548 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.6□□□□□ -0.07
MSX2P35548 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.6□□□□□ -0.07
MSX2P35548 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.6□□□□□ -0.07
MSX2P35548 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
MSX2P35548 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.6□□□□□ -0.07
MSX2P35548 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.6□□□□□ -0.07
MSX2P35548 AC112191.1-201ENST00000523689 701 ntBASIC14.6□□□□□ -0.07
MSX2P35548 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.6□□□□□ -0.07
MSX2P35548 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.6□□□□□ -0.07
MSX2P35548 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.6□□□□□ -0.07
MSX2P35548 Z83851.2-201ENST00000609564 659 ntBASIC14.6□□□□□ -0.07
MSX2P35548 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 AC130686.1-201ENST00000622936 2466 ntBASIC14.6□□□□□ -0.07
MSX2P35548 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.6□□□□□ -0.07
MSX2P35548 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.6□□□□□ -0.07
MSX2P35548 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
MSX2P35548 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
MSX2P35548 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.59□□□□□ -0.07
MSX2P35548 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
MSX2P35548 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.59□□□□□ -0.07
MSX2P35548 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 AC023090.2-201ENST00000625182 2110 ntBASIC14.59□□□□□ -0.07
MSX2P35548 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
MSX2P35548 AC012508.2-201ENST00000567613 1472 ntBASIC14.59□□□□□ -0.07
MSX2P35548 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
MSX2P35548 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.59□□□□□ -0.07
MSX2P35548 AL359881.3-201ENST00000602640 1721 ntBASIC14.59□□□□□ -0.07
MSX2P35548 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
MSX2P35548 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.59□□□□□ -0.07
MSX2P35548 TFAMP1-201ENST00000412727 736 ntBASIC14.59□□□□□ -0.07
MSX2P35548 AL671277.1-201ENST00000429656 993 ntBASIC14.59□□□□□ -0.07
MSX2P35548 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC14.59□□□□□ -0.07
MSX2P35548 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 AC079776.4-201ENST00000511039 504 ntBASIC14.59□□□□□ -0.07
MSX2P35548 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.59□□□□□ -0.07
MSX2P35548 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.59□□□□□ -0.07
MSX2P35548 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.59□□□□□ -0.07
MSX2P35548 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.59□□□□□ -0.07
MSX2P35548 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC14.59□□□□□ -0.07
MSX2P35548 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.59□□□□□ -0.07
MSX2P35548 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.59□□□□□ -0.07
MSX2P35548 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.59□□□□□ -0.07
MSX2P35548 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
MSX2P35548 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX2P35548 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms