Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ELP5-212ENST00000574255 671 ntTSL 2 BASIC18.58■□□□□ 0.57
COL5A3P25940 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL5A3P25940 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC18.58■□□□□ 0.57
COL5A3P25940 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A3P25940 AL118508.1-201ENST00000613502 2345 ntBASIC18.58■□□□□ 0.56
COL5A3P25940 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A3P25940 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
COL5A3P25940 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A3P25940 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
COL5A3P25940 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A3P25940 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.58■□□□□ 0.56
COL5A3P25940 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.58■□□□□ 0.56
COL5A3P25940 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL5A3P25940 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 STK16-203ENST00000409516 895 ntTSL 2 BASIC18.57■□□□□ 0.56
COL5A3P25940 RN7SKP109-201ENST00000410592 316 ntBASIC18.57■□□□□ 0.56
COL5A3P25940 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC18.57■□□□□ 0.56
COL5A3P25940 AC124068.2-201ENST00000569473 1109 ntBASIC18.57■□□□□ 0.56
COL5A3P25940 DRG2-220ENST00000583355 891 ntTSL 3 BASIC18.57■□□□□ 0.56
COL5A3P25940 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
COL5A3P25940 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC18.57■□□□□ 0.56
COL5A3P25940 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL5A3P25940 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC18.57■□□□□ 0.56
COL5A3P25940 OR8T1P-201ENST00000421347 918 ntBASIC18.57■□□□□ 0.56
COL5A3P25940 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC18.57■□□□□ 0.56
COL5A3P25940 DPY19L2P5-201ENST00000456300 331 ntBASIC18.57■□□□□ 0.56
COL5A3P25940 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.57■□□□□ 0.56
COL5A3P25940 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.57■□□□□ 0.56
COL5A3P25940 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.57■□□□□ 0.56
COL5A3P25940 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.57■□□□□ 0.56
COL5A3P25940 AP001184.1-201ENST00000637936 376 ntBASIC18.57■□□□□ 0.56
COL5A3P25940 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC18.57■□□□□ 0.56
COL5A3P25940 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL5A3P25940 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC18.56■□□□□ 0.56
COL5A3P25940 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC18.56■□□□□ 0.56
COL5A3P25940 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
COL5A3P25940 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 AP002353.1-201ENST00000528257 1599 ntBASIC18.56■□□□□ 0.56
COL5A3P25940 AP003680.1-201ENST00000598970 3660 ntBASIC18.56■□□□□ 0.56
COL5A3P25940 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC18.56■□□□□ 0.56
COL5A3P25940 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL5A3P25940 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL5A3P25940 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 AL592076.1-201ENST00000424448 303 ntBASIC18.56■□□□□ 0.56
COL5A3P25940 PPOX-204ENST00000462866 473 ntTSL 5 BASIC18.56■□□□□ 0.56
COL5A3P25940 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC18.56■□□□□ 0.56
COL5A3P25940 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC18.56■□□□□ 0.56
COL5A3P25940 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.56■□□□□ 0.56
COL5A3P25940 NAMA-206ENST00000605377 509 ntTSL 5 BASIC18.56■□□□□ 0.56
COL5A3P25940 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.56■□□□□ 0.56
COL5A3P25940 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 AC139712.1-201ENST00000378256 1875 ntBASIC18.56■□□□□ 0.56
COL5A3P25940 MRPL37P1-201ENST00000592451 1337 ntBASIC18.56■□□□□ 0.56
COL5A3P25940 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL5A3P25940 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC18.55■□□□□ 0.56
COL5A3P25940 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC18.55■□□□□ 0.56
COL5A3P25940 ERP29P1-201ENST00000442902 706 ntBASIC18.55■□□□□ 0.56
COL5A3P25940 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC18.55■□□□□ 0.56
COL5A3P25940 ALG1L6P-201ENST00000515248 758 ntBASIC18.55■□□□□ 0.56
COL5A3P25940 RNA5SP417-201ENST00000516459 108 ntBASIC18.55■□□□□ 0.56
COL5A3P25940 C2orf69P1-201ENST00000563532 1093 ntBASIC18.55■□□□□ 0.56
COL5A3P25940 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC18.55■□□□□ 0.56
COL5A3P25940 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC18.55■□□□□ 0.56
COL5A3P25940 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC18.55■□□□□ 0.56
COL5A3P25940 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.55■□□□□ 0.56
COL5A3P25940 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL5A3P25940 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC18.55■□□□□ 0.56
COL5A3P25940 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL5A3P25940 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL5A3P25940 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms