Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.21■□□□□ 0.02
MSH3P20585 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
MSH3P20585 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.21■□□□□ 0.02
MSH3P20585 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.2■□□□□ 0.02
MSH3P20585 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
MSH3P20585 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 AC007787.1-201ENST00000588095 1583 ntBASIC15.2■□□□□ 0.02
MSH3P20585 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.2■□□□□ 0.02
MSH3P20585 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.2■□□□□ 0.02
MSH3P20585 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MSH3P20585 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
MSH3P20585 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 CU639417.3-201ENST00000624240 1404 ntBASIC15.19■□□□□ 0.02
MSH3P20585 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.19■□□□□ 0.02
MSH3P20585 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
MSH3P20585 NUS1P3-201ENST00000423502 862 ntBASIC15.19■□□□□ 0.02
MSH3P20585 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
MSH3P20585 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.19■□□□□ 0.02
MSH3P20585 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.19■□□□□ 0.02
MSH3P20585 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.19■□□□□ 0.02
MSH3P20585 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 AC012508.2-201ENST00000567613 1472 ntBASIC15.19■□□□□ 0.02
MSH3P20585 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
MSH3P20585 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MSH3P20585 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
MSH3P20585 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 AGAP7P-201ENST00000582299 2062 ntBASIC15.18■□□□□ 0.02
MSH3P20585 AGAP14-201ENST00000624701 2060 ntBASIC15.18■□□□□ 0.02
MSH3P20585 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.18■□□□□ 0.02
MSH3P20585 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms