Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MIR1224-201ENST00000408193 85 ntBASIC15.39■□□□□ 0.05
VIMP08670 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
VIMP08670 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.39■□□□□ 0.05
VIMP08670 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.39■□□□□ 0.05
VIMP08670 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
VIMP08670 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 AC105339.3-201ENST00000560043 636 ntBASIC15.39■□□□□ 0.05
VIMP08670 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.39■□□□□ 0.05
VIMP08670 CLEC4GP1-201ENST00000596555 870 ntBASIC15.39■□□□□ 0.05
VIMP08670 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC15.39■□□□□ 0.05
VIMP08670 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
VIMP08670 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.39■□□□□ 0.05
VIMP08670 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 MAPT-IT1-201ENST00000624111 3016 ntBASIC15.39■□□□□ 0.05
VIMP08670 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 AP002414.3-201ENST00000589352 1468 ntBASIC15.39■□□□□ 0.05
VIMP08670 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
VIMP08670 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
VIMP08670 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.38■□□□□ 0.05
VIMP08670 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
VIMP08670 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.38■□□□□ 0.05
VIMP08670 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
VIMP08670 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
VIMP08670 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
VIMP08670 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
VIMP08670 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.38■□□□□ 0.05
VIMP08670 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 INIP-202ENST00000374236 874 ntTSL 2 BASIC15.38■□□□□ 0.05
VIMP08670 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.38■□□□□ 0.05
VIMP08670 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.38■□□□□ 0.05
VIMP08670 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.38■□□□□ 0.05
VIMP08670 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.38■□□□□ 0.05
VIMP08670 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.38■□□□□ 0.05
VIMP08670 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.38■□□□□ 0.05
VIMP08670 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.38■□□□□ 0.05
VIMP08670 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.38■□□□□ 0.05
VIMP08670 SPTSSB-204ENST00000617024 1292 ntBASIC15.38■□□□□ 0.05
VIMP08670 AC008735.5-201ENST00000623544 497 ntBASIC15.38■□□□□ 0.05
VIMP08670 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 AC004899.2-201ENST00000622993 3860 ntBASIC15.38■□□□□ 0.05
VIMP08670 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 AC130686.1-201ENST00000622936 2466 ntBASIC15.38■□□□□ 0.05
VIMP08670 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC15.38■□□□□ 0.05
VIMP08670 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC15.38■□□□□ 0.05
VIMP08670 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
VIMP08670 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
VIMP08670 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VIMP08670 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.37■□□□□ 0.05
VIMP08670 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VIMP08670 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
VIMP08670 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC15.37■□□□□ 0.05
VIMP08670 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
VIMP08670 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VIMP08670 CYP4F24P-201ENST00000586049 1580 ntBASIC15.37■□□□□ 0.05
VIMP08670 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VIMP08670 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
VIMP08670 AC055811.4-201ENST00000624039 1754 ntBASIC15.37■□□□□ 0.05
VIMP08670 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.37■□□□□ 0.05
VIMP08670 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC15.37■□□□□ 0.05
VIMP08670 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
VIMP08670 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VIMP08670 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
VIMP08670 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.37■□□□□ 0.05
VIMP08670 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.37■□□□□ 0.05
VIMP08670 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.37■□□□□ 0.05
VIMP08670 PRSS29P-201ENST00000440800 595 ntBASIC15.37■□□□□ 0.05
VIMP08670 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.37■□□□□ 0.05
VIMP08670 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.37■□□□□ 0.05
VIMP08670 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
VIMP08670 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.37■□□□□ 0.05
VIMP08670 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.37■□□□□ 0.05
VIMP08670 REXO1L6P-202ENST00000619970 1078 ntBASIC15.37■□□□□ 0.05
VIMP08670 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms