Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC9.16□□□□□ -0.94
APOBP04114 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC9.16□□□□□ -0.94
APOBP04114 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 BCL2L12P1-201ENST00000508390 733 ntBASIC9.16□□□□□ -0.94
APOBP04114 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC9.16□□□□□ -0.94
APOBP04114 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC9.16□□□□□ -0.94
APOBP04114 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC9.16□□□□□ -0.94
APOBP04114 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC9.16□□□□□ -0.94
APOBP04114 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC9.16□□□□□ -0.94
APOBP04114 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC9.16□□□□□ -0.94
APOBP04114 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC9.16□□□□□ -0.94
APOBP04114 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 PTGER4P2-201ENST00000328411 252 ntBASIC9.16□□□□□ -0.94
APOBP04114 FDPSP7-201ENST00000429043 1054 ntBASIC9.16□□□□□ -0.94
APOBP04114 HLA-DPA2-205ENST00000433582 733 ntBASIC9.16□□□□□ -0.94
APOBP04114 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC9.16□□□□□ -0.94
APOBP04114 PTGER4P3-201ENST00000458150 252 ntBASIC9.16□□□□□ -0.94
APOBP04114 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC9.16□□□□□ -0.94
APOBP04114 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC9.16□□□□□ -0.94
APOBP04114 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 BAK1P1-201ENST00000317045 636 ntBASIC9.16□□□□□ -0.94
APOBP04114 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC9.16□□□□□ -0.94
APOBP04114 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 AC007250.1-201ENST00000608934 338 ntBASIC9.16□□□□□ -0.94
APOBP04114 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 ZBED1P1-201ENST00000502364 1930 ntBASIC9.16□□□□□ -0.94
APOBP04114 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
APOBP04114 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC9.16□□□□□ -0.94
APOBP04114 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC9.15□□□□□ -0.94
APOBP04114 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
APOBP04114 NAA40-205ENST00000539656 577 ntTSL 4 BASIC9.15□□□□□ -0.94
APOBP04114 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC9.15□□□□□ -0.94
APOBP04114 EMC4-208ENST00000559078 599 ntTSL 3 BASIC9.15□□□□□ -0.94
APOBP04114 AC011462.4-201ENST00000616866 449 ntBASIC9.15□□□□□ -0.94
APOBP04114 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC9.15□□□□□ -0.94
APOBP04114 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC9.15□□□□□ -0.94
APOBP04114 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC9.15□□□□□ -0.94
APOBP04114 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
APOBP04114 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC9.15□□□□□ -0.94
APOBP04114 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 AC008536.3-201ENST00000623282 1599 ntBASIC9.15□□□□□ -0.94
APOBP04114 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC9.15□□□□□ -0.94
APOBP04114 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC9.15□□□□□ -0.94
APOBP04114 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC9.15□□□□□ -0.94
APOBP04114 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 CTBP2P6-201ENST00000526402 1229 ntBASIC9.15□□□□□ -0.94
APOBP04114 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC9.15□□□□□ -0.94
APOBP04114 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC9.15□□□□□ -0.94
APOBP04114 AC124068.2-201ENST00000569473 1109 ntBASIC9.15□□□□□ -0.94
APOBP04114 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC9.15□□□□□ -0.94
APOBP04114 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC9.15□□□□□ -0.94
APOBP04114 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC9.15□□□□□ -0.94
APOBP04114 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC9.15□□□□□ -0.94
APOBP04114 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC9.15□□□□□ -0.94
APOBP04114 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
APOBP04114 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC9.15□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms