Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM38O00635 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM38O00635 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM38O00635 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM38O00635 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TRIM38O00635 PHKG1P2-201ENST00000457537 863 ntBASIC15.39■□□□□ 0.05
TRIM38O00635 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM38O00635 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 ENPP7P5-201ENST00000541031 1031 ntBASIC15.39■□□□□ 0.05
TRIM38O00635 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM38O00635 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM38O00635 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM38O00635 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TRIM38O00635 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM38O00635 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 INTS4P2-202ENST00000614726 2019 ntBASIC15.39■□□□□ 0.05
TRIM38O00635 AL390755.1-201ENST00000623716 2027 ntBASIC15.39■□□□□ 0.05
TRIM38O00635 LINC00528-201ENST00000600723 2160 ntBASIC15.39■□□□□ 0.05
TRIM38O00635 AL359258.3-201ENST00000622910 2331 ntBASIC15.39■□□□□ 0.05
TRIM38O00635 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
TRIM38O00635 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRIM38O00635 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM38O00635 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM38O00635 OR2I1P-210ENST00000642037 4691 ntBASIC15.38■□□□□ 0.05
TRIM38O00635 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
TRIM38O00635 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM38O00635 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM38O00635 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM38O00635 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
TRIM38O00635 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM38O00635 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
TRIM38O00635 AC007191.1-201ENST00000623179 2995 ntBASIC15.38■□□□□ 0.05
TRIM38O00635 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TRIM38O00635 MIR1908-201ENST00000410394 80 ntBASIC15.38■□□□□ 0.05
TRIM38O00635 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.38■□□□□ 0.05
TRIM38O00635 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM38O00635 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM38O00635 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.38■□□□□ 0.05
TRIM38O00635 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 AP001889.1-201ENST00000525414 633 ntBASIC15.38■□□□□ 0.05
TRIM38O00635 AC068587.3-201ENST00000526613 355 ntBASIC15.38■□□□□ 0.05
TRIM38O00635 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM38O00635 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 PTP4A1P2-201ENST00000546033 454 ntBASIC15.38■□□□□ 0.05
TRIM38O00635 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM38O00635 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
TRIM38O00635 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM38O00635 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM38O00635 AC232323.1-201ENST00000540724 2099 ntBASIC15.38■□□□□ 0.05
TRIM38O00635 REXO1L5P-201ENST00000622260 2098 ntBASIC15.38■□□□□ 0.05
TRIM38O00635 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM38O00635 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms