Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ABR-228ENST00000574437 3196 ntTSL 5 BASIC17.43■□□□□ 0.38
USP28Q96RU2 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
USP28Q96RU2 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.43■□□□□ 0.38
USP28Q96RU2 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP28Q96RU2 AL138799.1-201ENST00000448213 1675 ntBASIC17.42■□□□□ 0.38
USP28Q96RU2 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP28Q96RU2 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.42■□□□□ 0.38
USP28Q96RU2 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP28Q96RU2 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP28Q96RU2 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.42■□□□□ 0.38
USP28Q96RU2 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP28Q96RU2 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.42■□□□□ 0.38
USP28Q96RU2 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
USP28Q96RU2 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.42■□□□□ 0.38
USP28Q96RU2 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.42■□□□□ 0.38
USP28Q96RU2 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.42■□□□□ 0.38
USP28Q96RU2 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
USP28Q96RU2 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP28Q96RU2 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP28Q96RU2 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
USP28Q96RU2 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
USP28Q96RU2 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.42■□□□□ 0.38
USP28Q96RU2 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP28Q96RU2 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.41■□□□□ 0.38
USP28Q96RU2 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
USP28Q96RU2 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
USP28Q96RU2 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.41■□□□□ 0.38
USP28Q96RU2 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
USP28Q96RU2 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 AC027601.5-201ENST00000624065 2482 ntBASIC17.41■□□□□ 0.38
USP28Q96RU2 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
USP28Q96RU2 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.41■□□□□ 0.38
USP28Q96RU2 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.41■□□□□ 0.38
USP28Q96RU2 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.41■□□□□ 0.38
USP28Q96RU2 VDAC1P7-201ENST00000462417 847 ntBASIC17.41■□□□□ 0.38
USP28Q96RU2 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.41■□□□□ 0.38
USP28Q96RU2 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.41■□□□□ 0.38
USP28Q96RU2 AL049840.4-201ENST00000602422 811 ntBASIC17.41■□□□□ 0.38
USP28Q96RU2 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.41■□□□□ 0.38
USP28Q96RU2 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
USP28Q96RU2 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.41■□□□□ 0.38
USP28Q96RU2 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
USP28Q96RU2 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
USP28Q96RU2 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP28Q96RU2 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 MX1-218ENST00000619682 1980 ntTSL 5 BASIC17.4■□□□□ 0.38
USP28Q96RU2 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC17.4■□□□□ 0.38
USP28Q96RU2 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP28Q96RU2 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
USP28Q96RU2 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP28Q96RU2 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
USP28Q96RU2 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP28Q96RU2 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.4■□□□□ 0.38
USP28Q96RU2 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP28Q96RU2 RN7SL399P-201ENST00000471648 279 ntBASIC17.4■□□□□ 0.38
USP28Q96RU2 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.4■□□□□ 0.38
USP28Q96RU2 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.4■□□□□ 0.38
USP28Q96RU2 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP28Q96RU2 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.4■□□□□ 0.38
USP28Q96RU2 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
USP28Q96RU2 AC036164.1-201ENST00000570544 333 ntBASIC17.4■□□□□ 0.38
USP28Q96RU2 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms