Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 AC006504.5-208ENST00000588784 2401 ntBASIC14.66□□□□□ -0.06
VPS13AQ96RL7 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 AC018629.1-201ENST00000623381 1736 ntBASIC14.66□□□□□ -0.06
VPS13AQ96RL7 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 IGKV1OR-2-201ENST00000457995 350 ntBASIC14.66□□□□□ -0.06
VPS13AQ96RL7 AC018846.1-201ENST00000568231 183 ntBASIC14.66□□□□□ -0.06
VPS13AQ96RL7 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 AL513523.2-202ENST00000427283 2040 ntBASIC14.66□□□□□ -0.06
VPS13AQ96RL7 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 AC006122.1-201ENST00000493323 440 ntBASIC14.66□□□□□ -0.06
VPS13AQ96RL7 RBM4-207ENST00000506523 654 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS13AQ96RL7 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 MIR5001-201ENST00000580185 100 ntBASIC14.65□□□□□ -0.06
VPS13AQ96RL7 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.65□□□□□ -0.06
VPS13AQ96RL7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VPS13AQ96RL7 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms