Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 AC138969.3-201ENST00000546612 1459 ntBASIC16.51■□□□□ 0.23
CCDC42Q96M95 AC138932.2-201ENST00000548268 1459 ntBASIC16.51■□□□□ 0.23
CCDC42Q96M95 AC126755.4-201ENST00000549796 1459 ntBASIC16.51■□□□□ 0.23
CCDC42Q96M95 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 AL022342.1-201ENST00000400363 863 ntBASIC16.51■□□□□ 0.23
CCDC42Q96M95 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.51■□□□□ 0.23
CCDC42Q96M95 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 CICP4-201ENST00000447359 2812 ntBASIC16.51■□□□□ 0.23
CCDC42Q96M95 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.5■□□□□ 0.23
CCDC42Q96M95 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 AP001267.2-201ENST00000532619 2086 ntBASIC16.5■□□□□ 0.23
CCDC42Q96M95 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC42Q96M95 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC42Q96M95 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 TOMM22P5-201ENST00000416399 439 ntBASIC16.49■□□□□ 0.23
CCDC42Q96M95 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 AC023141.5-201ENST00000458585 616 ntBASIC16.49■□□□□ 0.23
CCDC42Q96M95 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 LINC01115-203ENST00000606068 577 ntBASIC16.49■□□□□ 0.23
CCDC42Q96M95 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 AP001059.3-201ENST00000619053 235 ntBASIC16.49■□□□□ 0.23
CCDC42Q96M95 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CCDC42Q96M95 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC42Q96M95 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.49■□□□□ 0.23
CCDC42Q96M95 LILRP1-201ENST00000444199 1370 ntBASIC16.49■□□□□ 0.23
CCDC42Q96M95 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms