Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AC007191.1-201ENST00000623179 2995 ntBASIC11.49□□□□□ -0.57
LINC00477Q96M19 AC023908.3-201ENST00000564211 3047 ntBASIC11.49□□□□□ -0.57
LINC00477Q96M19 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 SYS1-203ENST00000414310 795 ntTSL 3 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 BX842568.4-201ENST00000421222 227 ntBASIC11.48□□□□□ -0.57
LINC00477Q96M19 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 KRT18P64-201ENST00000434946 1219 ntBASIC11.48□□□□□ -0.57
LINC00477Q96M19 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 AC010327.4-202ENST00000591484 748 ntBASIC11.48□□□□□ -0.57
LINC00477Q96M19 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 GPR39-203ENST00000622084 900 ntTSL 5 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 GRK6P1-201ENST00000400595 1711 ntBASIC11.48□□□□□ -0.57
LINC00477Q96M19 REXO1L4P-201ENST00000605109 1937 ntBASIC11.48□□□□□ -0.57
LINC00477Q96M19 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
LINC00477Q96M19 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 AC026748.1-201ENST00000624349 3251 ntBASIC11.48□□□□□ -0.57
LINC00477Q96M19 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00477Q96M19 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 TNN-203ENST00000622870 3719 ntTSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 CNN2P11-201ENST00000429351 262 ntBASIC11.47□□□□□ -0.57
LINC00477Q96M19 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC11.47□□□□□ -0.57
LINC00477Q96M19 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00477Q96M19 AC004066.1-201ENST00000502488 802 ntBASIC11.47□□□□□ -0.57
LINC00477Q96M19 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms