Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 LINC01144-201ENST00000626198 1710 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC000095.1-201ENST00000603208 874 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ZKSCAN5-202ENST00000394170 4344 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 DIS3-205ENST00000545453 3651 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 NSL1-201ENST00000366976 722 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 NEU3-202ENST00000526068 431 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 KRT90P-201ENST00000549264 1064 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TPI1-206ENST00000488464 791 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 PCDHGB2-201ENST00000522605 4602 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 OPRK1-201ENST00000265572 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 MIR326-201ENST00000362220 95 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ELP6-209ENST00000446787 894 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 CSF2RBP1-201ENST00000447905 391 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 IGHV3OR16-16-201ENST00000563644 343 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RANGAP1-202ENST00000405486 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 AC005229.1-201ENST00000392885 409 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 MIR1247-201ENST00000408206 136 ntBASIC4.76□□□□□ -1.65
SYNE1Q8NF91 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SYNE1Q8NF91 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms