Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.21□□□□□ -0.13
BEST3Q8N1M1 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.21□□□□□ -0.13
BEST3Q8N1M1 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 AP000812.2-201ENST00000538934 718 ntBASIC14.21□□□□□ -0.13
BEST3Q8N1M1 KRT90P-201ENST00000549264 1064 ntBASIC14.21□□□□□ -0.13
BEST3Q8N1M1 GNRHR2-203ENST00000581100 1187 ntBASIC14.21□□□□□ -0.13
BEST3Q8N1M1 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BEST3Q8N1M1 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
BEST3Q8N1M1 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
BEST3Q8N1M1 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
BEST3Q8N1M1 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
BEST3Q8N1M1 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
BEST3Q8N1M1 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.21□□□□□ -0.14
BEST3Q8N1M1 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
BEST3Q8N1M1 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
BEST3Q8N1M1 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 REXO1L6P-201ENST00000603433 1515 ntBASIC14.2□□□□□ -0.14
BEST3Q8N1M1 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 AC006058.4-201ENST00000624016 1670 ntBASIC14.2□□□□□ -0.14
BEST3Q8N1M1 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 CSF2RBP1-201ENST00000447905 391 ntBASIC14.2□□□□□ -0.14
BEST3Q8N1M1 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 FO681548.1-201ENST00000455617 1132 ntBASIC14.2□□□□□ -0.14
BEST3Q8N1M1 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
BEST3Q8N1M1 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 AP005117.1-202ENST00000581724 1908 ntBASIC14.19□□□□□ -0.14
BEST3Q8N1M1 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 KRT8P35-201ENST00000483942 1338 ntBASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms