Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
KRT39Q6A163 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
KRT39Q6A163 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.46■□□□□ 0.23
KRT39Q6A163 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.46■□□□□ 0.23
KRT39Q6A163 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.46■□□□□ 0.23
KRT39Q6A163 AP001063.1-201ENST00000568332 529 ntBASIC16.46■□□□□ 0.23
KRT39Q6A163 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.46■□□□□ 0.23
KRT39Q6A163 AC027307.3-201ENST00000594262 1100 ntBASIC16.46■□□□□ 0.23
KRT39Q6A163 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.46■□□□□ 0.23
KRT39Q6A163 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
KRT39Q6A163 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.46■□□□□ 0.22
KRT39Q6A163 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.46■□□□□ 0.22
KRT39Q6A163 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
KRT39Q6A163 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
KRT39Q6A163 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
KRT39Q6A163 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
KRT39Q6A163 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
KRT39Q6A163 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
KRT39Q6A163 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
KRT39Q6A163 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
KRT39Q6A163 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.45■□□□□ 0.22
KRT39Q6A163 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.45■□□□□ 0.22
KRT39Q6A163 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 KLF2P2-201ENST00000416807 1039 ntBASIC16.45■□□□□ 0.22
KRT39Q6A163 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.45■□□□□ 0.22
KRT39Q6A163 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.45■□□□□ 0.22
KRT39Q6A163 MIR3197-201ENST00000582241 73 ntBASIC16.45■□□□□ 0.22
KRT39Q6A163 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.45■□□□□ 0.22
KRT39Q6A163 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.45■□□□□ 0.22
KRT39Q6A163 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.45■□□□□ 0.22
KRT39Q6A163 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.45■□□□□ 0.22
KRT39Q6A163 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.45■□□□□ 0.22
KRT39Q6A163 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
KRT39Q6A163 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.45■□□□□ 0.22
KRT39Q6A163 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
KRT39Q6A163 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
KRT39Q6A163 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
KRT39Q6A163 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
KRT39Q6A163 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
KRT39Q6A163 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
KRT39Q6A163 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
KRT39Q6A163 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.44■□□□□ 0.22
KRT39Q6A163 AC098614.1-201ENST00000368528 745 ntBASIC16.44■□□□□ 0.22
KRT39Q6A163 AP006294.1-201ENST00000415407 339 ntBASIC16.44■□□□□ 0.22
KRT39Q6A163 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.44■□□□□ 0.22
KRT39Q6A163 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.44■□□□□ 0.22
KRT39Q6A163 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
KRT39Q6A163 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms