Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 UGT1A2P-201ENST00000454886 866 ntBASIC12.36□□□□□ -0.43
CX3CL1P78423 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12.36□□□□□ -0.43
CX3CL1P78423 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 FTH1-202ENST00000526640 786 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.36□□□□□ -0.43
CX3CL1P78423 AC011467.4-201ENST00000594891 528 ntBASIC12.36□□□□□ -0.43
CX3CL1P78423 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC12.36□□□□□ -0.43
CX3CL1P78423 AL355385.1-201ENST00000606123 409 ntBASIC12.36□□□□□ -0.43
CX3CL1P78423 AC009118.2-201ENST00000613275 655 ntBASIC12.36□□□□□ -0.43
CX3CL1P78423 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.36□□□□□ -0.43
CX3CL1P78423 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC12.36□□□□□ -0.43
CX3CL1P78423 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 MFF-204ENST00000353339 2186 ntTSL 5 BASIC12.36□□□□□ -0.43
CX3CL1P78423 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12.36□□□□□ -0.43
CX3CL1P78423 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CX3CL1P78423 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 AC138969.2-201ENST00000532739 9932 ntBASIC12.35□□□□□ -0.43
CX3CL1P78423 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 SPDYE19P-201ENST00000338590 713 ntBASIC12.35□□□□□ -0.43
CX3CL1P78423 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 RAC2-204ENST00000406508 893 ntTSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.35□□□□□ -0.43
CX3CL1P78423 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 TSPY16P-201ENST00000449843 468 ntBASIC12.35□□□□□ -0.43
CX3CL1P78423 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.35□□□□□ -0.43
CX3CL1P78423 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.35□□□□□ -0.43
CX3CL1P78423 TPRX2P-201ENST00000535362 881 ntBASIC12.35□□□□□ -0.43
CX3CL1P78423 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC12.35□□□□□ -0.43
CX3CL1P78423 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
CX3CL1P78423 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.35□□□□□ -0.43
CX3CL1P78423 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 UBL5-208ENST00000593087 320 ntTSL 3 BASIC12.35□□□□□ -0.43
CX3CL1P78423 AL096865.1-201ENST00000606796 927 ntBASIC12.35□□□□□ -0.43
CX3CL1P78423 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.35□□□□□ -0.43
CX3CL1P78423 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CX3CL1P78423 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC12.35□□□□□ -0.43
CX3CL1P78423 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms