Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.43□□□□□ -0.1
RAE1P78406 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.43□□□□□ -0.1
RAE1P78406 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.43□□□□□ -0.1
RAE1P78406 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.43□□□□□ -0.1
RAE1P78406 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.43□□□□□ -0.1
RAE1P78406 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.43□□□□□ -0.1
RAE1P78406 AP001582.1-201ENST00000525856 295 ntBASIC14.43□□□□□ -0.1
RAE1P78406 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.43□□□□□ -0.1
RAE1P78406 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.43□□□□□ -0.1
RAE1P78406 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.43□□□□□ -0.1
RAE1P78406 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.43□□□□□ -0.1
RAE1P78406 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.43□□□□□ -0.1
RAE1P78406 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.43□□□□□ -0.1
RAE1P78406 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
RAE1P78406 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
RAE1P78406 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.43□□□□□ -0.1
RAE1P78406 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.43□□□□□ -0.1
RAE1P78406 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 AC018665.1-201ENST00000622927 1362 ntBASIC14.43□□□□□ -0.1
RAE1P78406 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.43□□□□□ -0.1
RAE1P78406 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.43□□□□□ -0.1
RAE1P78406 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.43□□□□□ -0.1
RAE1P78406 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 BX640514.1-201ENST00000583223 1918 ntBASIC14.43□□□□□ -0.1
RAE1P78406 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
RAE1P78406 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RAE1P78406 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.42□□□□□ -0.1
RAE1P78406 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.42□□□□□ -0.1
RAE1P78406 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
RAE1P78406 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.42□□□□□ -0.1
RAE1P78406 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
RAE1P78406 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.42□□□□□ -0.1
RAE1P78406 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.42□□□□□ -0.1
RAE1P78406 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.42□□□□□ -0.1
RAE1P78406 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
RAE1P78406 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
RAE1P78406 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 API5-211ENST00000534695 560 ntTSL 5 BASIC14.42□□□□□ -0.1
RAE1P78406 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.42□□□□□ -0.1
RAE1P78406 TMEM261P1-201ENST00000604899 340 ntBASIC14.42□□□□□ -0.1
RAE1P78406 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
RAE1P78406 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
RAE1P78406 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.42□□□□□ -0.1
RAE1P78406 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.42□□□□□ -0.1
RAE1P78406 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
RAE1P78406 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
RAE1P78406 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
RAE1P78406 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.42□□□□□ -0.1
RAE1P78406 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RAE1P78406 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.42□□□□□ -0.1
RAE1P78406 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAE1P78406 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAE1P78406 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.41□□□□□ -0.1
RAE1P78406 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAE1P78406 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RAE1P78406 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.41□□□□□ -0.1
RAE1P78406 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAE1P78406 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RAE1P78406 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
RAE1P78406 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms