Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.77□□□□□ -0.37
HOXA1P49639 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HOXA1P49639 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.76□□□□□ -0.37
HOXA1P49639 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 AC112693.3-201ENST00000624819 1983 ntBASIC12.76□□□□□ -0.37
HOXA1P49639 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 AC018892.3-201ENST00000623986 2499 ntBASIC12.76□□□□□ -0.37
HOXA1P49639 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 AC002056.1-201ENST00000395613 760 ntBASIC12.76□□□□□ -0.37
HOXA1P49639 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 AC098859.1-201ENST00000502915 1238 ntBASIC12.76□□□□□ -0.37
HOXA1P49639 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC12.76□□□□□ -0.37
HOXA1P49639 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC12.76□□□□□ -0.37
HOXA1P49639 AC064836.3-201ENST00000607928 673 ntBASIC12.76□□□□□ -0.37
HOXA1P49639 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.76□□□□□ -0.37
HOXA1P49639 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 REM2-202ENST00000536884 1331 ntTSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC12.76□□□□□ -0.37
HOXA1P49639 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.76□□□□□ -0.37
HOXA1P49639 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
HOXA1P49639 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.76□□□□□ -0.37
HOXA1P49639 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HOXA1P49639 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HOXA1P49639 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
HOXA1P49639 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC12.75□□□□□ -0.37
HOXA1P49639 BEX3-201ENST00000361298 921 ntTSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC12.75□□□□□ -0.37
HOXA1P49639 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HOXA1P49639 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HOXA1P49639 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC12.75□□□□□ -0.37
HOXA1P49639 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.75□□□□□ -0.37
HOXA1P49639 AC112191.1-201ENST00000523689 701 ntBASIC12.75□□□□□ -0.37
HOXA1P49639 AC105233.2-201ENST00000523697 349 ntBASIC12.75□□□□□ -0.37
HOXA1P49639 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms