Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC19.48■□□□□ 0.71
COL18A1P39060 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL18A1P39060 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC19.48■□□□□ 0.71
COL18A1P39060 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
COL18A1P39060 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL18A1P39060 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC19.47■□□□□ 0.71
COL18A1P39060 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC19.47■□□□□ 0.71
COL18A1P39060 AL354861.1-201ENST00000445213 355 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
COL18A1P39060 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC19.47■□□□□ 0.71
COL18A1P39060 RN7SL277P-201ENST00000481521 288 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC19.47■□□□□ 0.71
COL18A1P39060 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 MIR2392-201ENST00000584881 84 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
COL18A1P39060 AP003680.1-201ENST00000598970 3660 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC19.47■□□□□ 0.71
COL18A1P39060 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC19.47■□□□□ 0.71
COL18A1P39060 LINC01101-201ENST00000622953 1884 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 SSR4P1-203ENST00000599569 2260 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.47■□□□□ 0.71
COL18A1P39060 AC009093.10-201ENST00000641956 1442 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 AL592076.1-201ENST00000424448 303 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 GAS5-209ENST00000430245 723 ntTSL 3 BASIC19.47■□□□□ 0.71
COL18A1P39060 AL157792.1-201ENST00000488281 530 ntBASIC19.47■□□□□ 0.71
COL18A1P39060 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC19.47■□□□□ 0.71
COL18A1P39060 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC19.47■□□□□ 0.71
COL18A1P39060 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC19.47■□□□□ 0.71
COL18A1P39060 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
COL18A1P39060 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL18A1P39060 AL118508.1-201ENST00000613502 2345 ntBASIC19.46■□□□□ 0.71
COL18A1P39060 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 WASH3P-207ENST00000560956 1394 ntBASIC19.46■□□□□ 0.71
COL18A1P39060 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.46■□□□□ 0.71
COL18A1P39060 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.46■□□□□ 0.71
COL18A1P39060 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
COL18A1P39060 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 RNF165-205ENST00000588679 2904 ntBASIC19.46■□□□□ 0.71
COL18A1P39060 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC19.46■□□□□ 0.71
COL18A1P39060 AC073869.2-201ENST00000417338 1026 ntBASIC19.46■□□□□ 0.71
COL18A1P39060 GUSBP10-201ENST00000417412 665 ntBASIC19.46■□□□□ 0.71
COL18A1P39060 KRT8P1-201ENST00000557533 1207 ntBASIC19.46■□□□□ 0.71
COL18A1P39060 C2orf69P1-201ENST00000563532 1093 ntBASIC19.46■□□□□ 0.71
COL18A1P39060 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC19.46■□□□□ 0.71
COL18A1P39060 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC19.46■□□□□ 0.71
COL18A1P39060 AP002353.1-201ENST00000528257 1599 ntBASIC19.46■□□□□ 0.71
COL18A1P39060 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL18A1P39060 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC19.46■□□□□ 0.71
COL18A1P39060 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.7
COL18A1P39060 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL18A1P39060 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL18A1P39060 MIR645-201ENST00000385283 94 ntBASIC19.45■□□□□ 0.7
COL18A1P39060 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC19.45■□□□□ 0.7
COL18A1P39060 OR8T1P-201ENST00000421347 918 ntBASIC19.45■□□□□ 0.7
COL18A1P39060 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL18A1P39060 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL18A1P39060 RN7SL396P-201ENST00000471086 295 ntBASIC19.45■□□□□ 0.7
COL18A1P39060 REEP5-205ENST00000504247 480 ntTSL 5 BASIC19.45■□□□□ 0.7
COL18A1P39060 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC19.45■□□□□ 0.7
COL18A1P39060 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL18A1P39060 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC19.45■□□□□ 0.7
COL18A1P39060 API5-203ENST00000455725 2257 ntTSL 2 BASIC19.45■□□□□ 0.7
COL18A1P39060 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL18A1P39060 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
COL18A1P39060 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL18A1P39060 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL18A1P39060 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL18A1P39060 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL18A1P39060 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC19.44■□□□□ 0.7
COL18A1P39060 AC092638.2-201ENST00000441105 947 ntBASIC19.44■□□□□ 0.7
COL18A1P39060 DPY19L2P5-201ENST00000456300 331 ntBASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms