Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.09■□□□□ 0.33
CIITAP33076 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.09■□□□□ 0.33
CIITAP33076 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 MPV17-205ENST00000402310 906 ntTSL 5 BASIC17.09■□□□□ 0.33
CIITAP33076 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.09■□□□□ 0.33
CIITAP33076 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.09■□□□□ 0.33
CIITAP33076 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.09■□□□□ 0.33
CIITAP33076 AP003171.2-201ENST00000528208 925 ntBASIC17.09■□□□□ 0.33
CIITAP33076 C2orf69P2-201ENST00000562032 1123 ntBASIC17.09■□□□□ 0.33
CIITAP33076 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.09■□□□□ 0.33
CIITAP33076 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.09■□□□□ 0.33
CIITAP33076 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.09■□□□□ 0.33
CIITAP33076 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.09■□□□□ 0.33
CIITAP33076 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.09■□□□□ 0.33
CIITAP33076 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.09■□□□□ 0.33
CIITAP33076 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.09■□□□□ 0.33
CIITAP33076 AHCYP2-201ENST00000430630 1300 ntBASIC17.09■□□□□ 0.33
CIITAP33076 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CIITAP33076 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CIITAP33076 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CIITAP33076 TCAF2P1-201ENST00000291129 2421 ntBASIC17.09■□□□□ 0.33
CIITAP33076 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CIITAP33076 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.09■□□□□ 0.33
CIITAP33076 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.09■□□□□ 0.33
CIITAP33076 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.09■□□□□ 0.33
CIITAP33076 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CIITAP33076 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CIITAP33076 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CIITAP33076 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
CIITAP33076 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CIITAP33076 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CIITAP33076 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
CIITAP33076 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CIITAP33076 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CIITAP33076 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CIITAP33076 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CIITAP33076 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.08■□□□□ 0.33
CIITAP33076 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CIITAP33076 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
CIITAP33076 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
CIITAP33076 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.08■□□□□ 0.32
CIITAP33076 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.08■□□□□ 0.32
CIITAP33076 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.08■□□□□ 0.32
CIITAP33076 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.08■□□□□ 0.32
CIITAP33076 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 FTLP10-202ENST00000505798 471 ntBASIC17.08■□□□□ 0.32
CIITAP33076 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.08■□□□□ 0.32
CIITAP33076 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.08■□□□□ 0.32
CIITAP33076 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.08■□□□□ 0.32
CIITAP33076 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
CIITAP33076 AC106820.3-201ENST00000561653 397 ntBASIC17.08■□□□□ 0.32
CIITAP33076 DUX4L45-201ENST00000566406 1057 ntBASIC17.08■□□□□ 0.32
CIITAP33076 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.08■□□□□ 0.32
CIITAP33076 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.08■□□□□ 0.32
CIITAP33076 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.08■□□□□ 0.32
CIITAP33076 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
CIITAP33076 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CIITAP33076 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.08■□□□□ 0.32
CIITAP33076 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CIITAP33076 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
CIITAP33076 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.07■□□□□ 0.32
CIITAP33076 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.07■□□□□ 0.32
CIITAP33076 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.07■□□□□ 0.32
CIITAP33076 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.07■□□□□ 0.32
CIITAP33076 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CIITAP33076 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms