Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.01□□□□□ -0.17
MSX1P28360 BNIP3P42-201ENST00000454982 569 ntBASIC14.01□□□□□ -0.17
MSX1P28360 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.01□□□□□ -0.17
MSX1P28360 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.01□□□□□ -0.17
MSX1P28360 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.01□□□□□ -0.17
MSX1P28360 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
MSX1P28360 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 BNIP3P29-201ENST00000598302 571 ntBASIC14.01□□□□□ -0.17
MSX1P28360 AC011447.5-201ENST00000616168 564 ntBASIC14.01□□□□□ -0.17
MSX1P28360 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.01□□□□□ -0.17
MSX1P28360 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 AC023024.2-201ENST00000623561 1993 ntBASIC14.01□□□□□ -0.17
MSX1P28360 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX1P28360 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
MSX1P28360 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX1P28360 CICP11-201ENST00000434745 2827 ntBASIC14□□□□□ -0.17
MSX1P28360 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 AC006486.2-201ENST00000624246 2199 ntBASIC14□□□□□ -0.17
MSX1P28360 AC138035.3-201ENST00000622706 2791 ntBASIC14□□□□□ -0.17
MSX1P28360 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14□□□□□ -0.17
MSX1P28360 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
MSX1P28360 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14□□□□□ -0.17
MSX1P28360 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14□□□□□ -0.17
MSX1P28360 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
MSX1P28360 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
MSX1P28360 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14□□□□□ -0.17
MSX1P28360 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14□□□□□ -0.17
MSX1P28360 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14□□□□□ -0.17
MSX1P28360 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
MSX1P28360 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14□□□□□ -0.17
MSX1P28360 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14□□□□□ -0.17
MSX1P28360 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14□□□□□ -0.17
MSX1P28360 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 MFF-223ENST00000524634 647 ntTSL 2 BASIC14□□□□□ -0.17
MSX1P28360 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
MSX1P28360 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14□□□□□ -0.17
MSX1P28360 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14□□□□□ -0.17
MSX1P28360 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14□□□□□ -0.17
MSX1P28360 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14□□□□□ -0.17
MSX1P28360 AL606495.2-201ENST00000605867 535 ntBASIC14□□□□□ -0.17
MSX1P28360 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14□□□□□ -0.17
MSX1P28360 RPSAP52-203ENST00000622976 1023 ntBASIC14□□□□□ -0.17
MSX1P28360 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
MSX1P28360 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
MSX1P28360 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 AC023157.3-201ENST00000619086 2088 ntBASIC14□□□□□ -0.17
MSX1P28360 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14□□□□□ -0.17
MSX1P28360 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX1P28360 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14□□□□□ -0.17
MSX1P28360 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.99□□□□□ -0.17
MSX1P28360 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
MSX1P28360 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.99□□□□□ -0.17
MSX1P28360 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
MSX1P28360 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms