Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.61■□□□□ 0.57
COL5A3P25940 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.61■□□□□ 0.57
COL5A3P25940 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.61■□□□□ 0.57
COL5A3P25940 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL5A3P25940 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC18.61■□□□□ 0.57
COL5A3P25940 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 MIR645-201ENST00000385283 94 ntBASIC18.6■□□□□ 0.57
COL5A3P25940 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC18.6■□□□□ 0.57
COL5A3P25940 GAS5-209ENST00000430245 723 ntTSL 3 BASIC18.6■□□□□ 0.57
COL5A3P25940 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 PSMD4P1-201ENST00000433951 1109 ntBASIC18.6■□□□□ 0.57
COL5A3P25940 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC18.6■□□□□ 0.57
COL5A3P25940 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC18.6■□□□□ 0.57
COL5A3P25940 LINC00634-202ENST00000505157 222 ntBASIC18.6■□□□□ 0.57
COL5A3P25940 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
COL5A3P25940 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC18.6■□□□□ 0.57
COL5A3P25940 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC18.6■□□□□ 0.57
COL5A3P25940 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC18.6■□□□□ 0.57
COL5A3P25940 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A3P25940 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A3P25940 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL5A3P25940 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A3P25940 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A3P25940 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A3P25940 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.6■□□□□ 0.57
COL5A3P25940 AP000911.2-201ENST00000534330 502 ntBASIC18.6■□□□□ 0.57
COL5A3P25940 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A3P25940 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A3P25940 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC18.6■□□□□ 0.57
COL5A3P25940 KRT8P1-201ENST00000557533 1207 ntBASIC18.6■□□□□ 0.57
COL5A3P25940 MT3-203ENST00000565838 421 ntTSL 3 BASIC18.6■□□□□ 0.57
COL5A3P25940 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC18.6■□□□□ 0.57
COL5A3P25940 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL5A3P25940 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.6■□□□□ 0.57
COL5A3P25940 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
COL5A3P25940 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.59■□□□□ 0.57
COL5A3P25940 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC18.59■□□□□ 0.57
COL5A3P25940 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 F10-203ENST00000409306 1450 ntTSL 3 BASIC18.59■□□□□ 0.57
COL5A3P25940 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC18.59■□□□□ 0.57
COL5A3P25940 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC18.59■□□□□ 0.57
COL5A3P25940 LINC01101-201ENST00000622953 1884 ntBASIC18.59■□□□□ 0.57
COL5A3P25940 TMBIM7P-203ENST00000641617 1718 ntBASIC18.59■□□□□ 0.57
COL5A3P25940 API5-203ENST00000455725 2257 ntTSL 2 BASIC18.59■□□□□ 0.57
COL5A3P25940 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.59■□□□□ 0.57
COL5A3P25940 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC18.59■□□□□ 0.57
COL5A3P25940 AC092135.3-201ENST00000624151 1846 ntBASIC18.59■□□□□ 0.57
COL5A3P25940 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL5A3P25940 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC18.59■□□□□ 0.57
COL5A3P25940 AC092638.2-201ENST00000441105 947 ntBASIC18.59■□□□□ 0.57
COL5A3P25940 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.59■□□□□ 0.57
COL5A3P25940 AC010234.1-201ENST00000494599 870 ntBASIC18.59■□□□□ 0.57
COL5A3P25940 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL5A3P25940 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC18.59■□□□□ 0.57
COL5A3P25940 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC18.59■□□□□ 0.57
COL5A3P25940 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 SSR4P1-203ENST00000599569 2260 ntBASIC18.59■□□□□ 0.57
COL5A3P25940 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.59■□□□□ 0.57
COL5A3P25940 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL5A3P25940 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL5A3P25940 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.57
COL5A3P25940 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL5A3P25940 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC18.58■□□□□ 0.57
COL5A3P25940 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL5A3P25940 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
COL5A3P25940 HLA-DMA-203ENST00000395305 777 ntBASIC18.58■□□□□ 0.57
COL5A3P25940 GUSBP10-201ENST00000417412 665 ntBASIC18.58■□□□□ 0.57
COL5A3P25940 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC18.58■□□□□ 0.57
COL5A3P25940 IDS-203ENST00000428056 1213 ntTSL 2 BASIC18.58■□□□□ 0.57
COL5A3P25940 AL354861.1-201ENST00000445213 355 ntBASIC18.58■□□□□ 0.57
COL5A3P25940 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC18.58■□□□□ 0.57
COL5A3P25940 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms