Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 BX284668.4-201ENST00000453917 508 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 KRT8P13-201ENST00000463294 1010 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 HLA-J-204ENST00000495278 958 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 NOP2-211ENST00000540228 668 ntTSL 2 BASIC19.73■□□□□ 0.75
COL3A1P02461 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 MIR6720-201ENST00000611664 98 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 FAM90A7P-201ENST00000382628 1395 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 FAM90A23P-201ENST00000400136 1395 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 CYP4F23P-201ENST00000593402 1579 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 AL354702.1-201ENST00000442006 1960 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC19.73■□□□□ 0.75
COL3A1P02461 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
COL3A1P02461 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC19.73■□□□□ 0.75
COL3A1P02461 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.73■□□□□ 0.75
COL3A1P02461 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL3A1P02461 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC19.73■□□□□ 0.75
COL3A1P02461 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC19.73■□□□□ 0.75
COL3A1P02461 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 AL136172.1-201ENST00000598590 1394 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 NPPA-201ENST00000376476 728 ntTSL 3 BASIC19.73■□□□□ 0.75
COL3A1P02461 AC006122.1-201ENST00000493323 440 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 SCARNA20.5-201ENST00000516991 142 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.73■□□□□ 0.75
COL3A1P02461 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 ACTG1P17-201ENST00000558391 1119 ntBASIC19.73■□□□□ 0.75
COL3A1P02461 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.73■□□□□ 0.75
COL3A1P02461 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
COL3A1P02461 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL3A1P02461 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL3A1P02461 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
COL3A1P02461 CICP14-201ENST00000629111 2732 ntBASIC19.72■□□□□ 0.75
COL3A1P02461 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
COL3A1P02461 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
COL3A1P02461 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL3A1P02461 AMT-239ENST00000636865 1914 ntTSL 5 BASIC19.72■□□□□ 0.75
COL3A1P02461 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
COL3A1P02461 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL3A1P02461 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC19.72■□□□□ 0.75
COL3A1P02461 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC19.72■□□□□ 0.75
COL3A1P02461 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL3A1P02461 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.72■□□□□ 0.75
COL3A1P02461 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC19.72■□□□□ 0.75
COL3A1P02461 AP000346.4-201ENST00000614827 381 ntBASIC19.72■□□□□ 0.75
COL3A1P02461 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC19.72■□□□□ 0.75
COL3A1P02461 CICP24-201ENST00000605464 2705 ntBASIC19.72■□□□□ 0.75
COL3A1P02461 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL3A1P02461 TMBIM7P-202ENST00000641474 1516 ntBASIC19.72■□□□□ 0.75
COL3A1P02461 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
COL3A1P02461 AC139712.1-201ENST00000378256 1875 ntBASIC19.71■□□□□ 0.75
COL3A1P02461 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
COL3A1P02461 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC19.71■□□□□ 0.75
COL3A1P02461 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
COL3A1P02461 AC004899.1-201ENST00000424687 1714 ntBASIC19.71■□□□□ 0.75
COL3A1P02461 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
COL3A1P02461 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
COL3A1P02461 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
COL3A1P02461 DEF8-202ENST00000418391 852 ntTSL 2 BASIC19.71■□□□□ 0.75
COL3A1P02461 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.71■□□□□ 0.75
COL3A1P02461 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC19.71■□□□□ 0.75
COL3A1P02461 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC19.71■□□□□ 0.75
COL3A1P02461 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC19.71■□□□□ 0.75
COL3A1P02461 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC19.71■□□□□ 0.75
COL3A1P02461 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
COL3A1P02461 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC19.71■□□□□ 0.75
COL3A1P02461 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL3A1P02461 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms