Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 SCARNA12-201ENST00000459155 270 ntBASIC11.53□□□□□ -0.56
COL6A5A8TX70 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 RPL18AP8-201ENST00000486071 528 ntBASIC11.53□□□□□ -0.56
COL6A5A8TX70 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 TRMT112P3-201ENST00000580149 358 ntBASIC11.53□□□□□ -0.56
COL6A5A8TX70 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 AL359258.3-201ENST00000622910 2331 ntBASIC11.53□□□□□ -0.56
COL6A5A8TX70 AC007292.2-201ENST00000593524 1812 ntBASIC11.53□□□□□ -0.56
COL6A5A8TX70 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 AC092570.1-201ENST00000414446 469 ntBASIC11.53□□□□□ -0.56
COL6A5A8TX70 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 OR2A1-AS1-210ENST00000496968 531 ntBASIC11.53□□□□□ -0.56
COL6A5A8TX70 ALG1L3P-201ENST00000503331 765 ntBASIC11.53□□□□□ -0.56
COL6A5A8TX70 CASP3-205ENST00000517513 964 ntTSL 5 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 RN7SL357P-201ENST00000581065 298 ntBASIC11.53□□□□□ -0.56
COL6A5A8TX70 ST5-261ENST00000626808 1071 ntTSL 5 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC11.53□□□□□ -0.56
COL6A5A8TX70 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
COL6A5A8TX70 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
COL6A5A8TX70 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC11.52□□□□□ -0.56
COL6A5A8TX70 AC011676.5-201ENST00000624864 2660 ntBASIC11.52□□□□□ -0.56
COL6A5A8TX70 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.56
COL6A5A8TX70 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC11.52□□□□□ -0.56
COL6A5A8TX70 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.56
COL6A5A8TX70 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC11.52□□□□□ -0.56
COL6A5A8TX70 AC013726.1-201ENST00000563747 2285 ntBASIC11.52□□□□□ -0.56
COL6A5A8TX70 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
COL6A5A8TX70 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
COL6A5A8TX70 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
COL6A5A8TX70 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AL121949.3-201ENST00000406684 385 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 GUSBP10-201ENST00000417412 665 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 XBP1P1-201ENST00000436573 652 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 GNG10P1-201ENST00000452289 199 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 PFN2-205ENST00000461868 613 ntTSL 2 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC092896.1-201ENST00000465850 380 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC026434.2-201ENST00000506094 1078 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 MIR2278-201ENST00000516344 96 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 OR5BD1P-201ENST00000532527 817 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 MIR4254-201ENST00000581063 76 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 APOC1-209ENST00000592885 562 ntTSL 3 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 BCL2-203ENST00000589955 5011 ntBASIC11.52□□□□□ -0.57
COL6A5A8TX70 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC11.52□□□□□ -0.57
COL6A5A8TX70 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
COL6A5A8TX70 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms