Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 METTL21AP1-201ENST00000438852 635 ntBASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 SERPINA7P1-201ENST00000443077 631 ntBASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 GAPDHP40-201ENST00000505218 1006 ntBASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 DUX4L27-201ENST00000554796 1261 ntBASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 RERG-209ENST00000546331 1383 ntTSL 2 BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIF3AQ9Y2N7 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 AL359258.3-201ENST00000622910 2331 ntBASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 AC004066.1-201ENST00000502488 802 ntBASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HIF3AQ9Y2N7 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms