Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS4AQ9UN37 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 AZGP1P1-201ENST00000411909 902 ntBASIC14.88□□□□□ -0.03
VPS4AQ9UN37 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 RN7SL618P-201ENST00000477850 296 ntBASIC14.88□□□□□ -0.03
VPS4AQ9UN37 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 AC099568.2-201ENST00000609194 695 ntBASIC14.88□□□□□ -0.03
VPS4AQ9UN37 AC133552.6-201ENST00000613406 534 ntBASIC14.88□□□□□ -0.03
VPS4AQ9UN37 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
VPS4AQ9UN37 CICP4-201ENST00000447359 2812 ntBASIC14.88□□□□□ -0.03
VPS4AQ9UN37 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 AC136604.1-201ENST00000418535 575 ntBASIC14.87□□□□□ -0.03
VPS4AQ9UN37 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 AGAP7P-201ENST00000582299 2062 ntBASIC14.87□□□□□ -0.03
VPS4AQ9UN37 AGAP14-201ENST00000624701 2060 ntBASIC14.87□□□□□ -0.03
VPS4AQ9UN37 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 AC023024.2-201ENST00000623561 1993 ntBASIC14.87□□□□□ -0.03
VPS4AQ9UN37 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 AL133338.1-201ENST00000565695 1517 ntBASIC14.87□□□□□ -0.03
VPS4AQ9UN37 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
VPS4AQ9UN37 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 AL009178.2-201ENST00000597278 2719 ntBASIC14.86□□□□□ -0.03
VPS4AQ9UN37 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
VPS4AQ9UN37 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms