Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SIX2Q9NPC8 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 AL391825.1-201ENST00000457671 1364 ntBASIC16.31■□□□□ 0.2
SIX2Q9NPC8 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 KLF2P2-201ENST00000416807 1039 ntBASIC16.31■□□□□ 0.2
SIX2Q9NPC8 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 FAM207CP-201ENST00000443486 507 ntBASIC16.31■□□□□ 0.2
SIX2Q9NPC8 MYCLP2-201ENST00000449268 967 ntBASIC16.31■□□□□ 0.2
SIX2Q9NPC8 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 SPCS2P1-201ENST00000561636 679 ntBASIC16.31■□□□□ 0.2
SIX2Q9NPC8 WASH4P-201ENST00000564273 1246 ntBASIC16.31■□□□□ 0.2
SIX2Q9NPC8 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 AL354702.1-201ENST00000442006 1960 ntBASIC16.31■□□□□ 0.2
SIX2Q9NPC8 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SIX2Q9NPC8 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 SOCS2P1-201ENST00000417727 557 ntBASIC16.3■□□□□ 0.2
SIX2Q9NPC8 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 CLUHP6-201ENST00000580789 941 ntBASIC16.3■□□□□ 0.2
SIX2Q9NPC8 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 AL096865.1-201ENST00000606796 927 ntBASIC16.3■□□□□ 0.2
SIX2Q9NPC8 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SIX2Q9NPC8 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms