Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 AC006453.4-201ENST00000636949 1252 ntBASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 TNRC18P2-201ENST00000417666 2714 ntBASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 AC023157.3-201ENST00000619086 2088 ntBASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TM9SF3Q9HD45 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 ACTBP8-201ENST00000403258 1108 ntBASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 AC007969.1-201ENST00000433675 447 ntBASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TM9SF3Q9HD45 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TM9SF3Q9HD45 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 CD8B2-202ENST00000417670 633 ntBASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 AC114812.1-204ENST00000449669 728 ntBASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 HOMER2P2-201ENST00000451621 847 ntBASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 AL591846.1-201ENST00000451736 433 ntBASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 AC025181.2-201ENST00000606994 802 ntBASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms