Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAIPQ9BWF2 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRAIPQ9BWF2 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAIPQ9BWF2 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAIPQ9BWF2 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAIPQ9BWF2 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAIPQ9BWF2 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAIPQ9BWF2 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAIPQ9BWF2 AC127383.1-201ENST00000444697 1800 ntBASIC16.73■□□□□ 0.27
TRAIPQ9BWF2 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 AC136621.1-201ENST00000624017 2304 ntBASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 AC104457.1-201ENST00000401024 814 ntBASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 RPL5P21-201ENST00000404620 815 ntBASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 TMBIM7P-203ENST00000641617 1718 ntBASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 AC148477.4-201ENST00000613430 1793 ntBASIC16.72■□□□□ 0.27
TRAIPQ9BWF2 AHCYP2-201ENST00000430630 1300 ntBASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 AC138951.2-201ENST00000623455 1161 ntBASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 AL603764.1-201ENST00000636452 321 ntBASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRAIPQ9BWF2 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms