Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
COL12A1Q99715 RNLS-203ENST00000437752 525 ntTSL 2 BASIC13.01□□□□□ -0.33
COL12A1Q99715 RN7SL81P-201ENST00000493781 261 ntBASIC13.01□□□□□ -0.33
COL12A1Q99715 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.01□□□□□ -0.33
COL12A1Q99715 FAM86B3P-203ENST00000523992 854 ntBASIC13.01□□□□□ -0.33
COL12A1Q99715 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL12A1Q99715 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.01□□□□□ -0.33
COL12A1Q99715 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.01□□□□□ -0.33
COL12A1Q99715 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC13.01□□□□□ -0.33
COL12A1Q99715 RPSAP15-201ENST00000448168 861 ntBASIC13.01□□□□□ -0.33
COL12A1Q99715 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC13.01□□□□□ -0.33
COL12A1Q99715 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
COL12A1Q99715 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL12A1Q99715 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL12A1Q99715 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13□□□□□ -0.33
COL12A1Q99715 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 KRT8P31-201ENST00000504812 1408 ntBASIC13□□□□□ -0.33
COL12A1Q99715 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 AF274858.1-201ENST00000406288 372 ntBASIC13□□□□□ -0.33
COL12A1Q99715 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC13□□□□□ -0.33
COL12A1Q99715 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13□□□□□ -0.33
COL12A1Q99715 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL12A1Q99715 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13□□□□□ -0.33
COL12A1Q99715 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL12A1Q99715 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 CTBP2P8-201ENST00000422584 1330 ntBASIC13□□□□□ -0.33
COL12A1Q99715 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC13□□□□□ -0.33
COL12A1Q99715 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC13□□□□□ -0.33
COL12A1Q99715 DPY19L2P5-201ENST00000456300 331 ntBASIC13□□□□□ -0.33
COL12A1Q99715 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
COL12A1Q99715 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC13□□□□□ -0.33
COL12A1Q99715 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
COL12A1Q99715 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC13□□□□□ -0.33
COL12A1Q99715 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13□□□□□ -0.33
COL12A1Q99715 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 CICP13-201ENST00000422015 2789 ntBASIC13□□□□□ -0.33
COL12A1Q99715 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL12A1Q99715 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13□□□□□ -0.33
COL12A1Q99715 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13□□□□□ -0.33
COL12A1Q99715 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL12A1Q99715 SUPT20HL2-201ENST00000486479 2409 ntBASIC13□□□□□ -0.33
COL12A1Q99715 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC12.99□□□□□ -0.33
COL12A1Q99715 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC12.99□□□□□ -0.33
COL12A1Q99715 ORAOV1P1-201ENST00000503108 395 ntBASIC12.99□□□□□ -0.33
COL12A1Q99715 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC12.99□□□□□ -0.33
COL12A1Q99715 AC092299.1-201ENST00000632679 757 ntBASIC12.99□□□□□ -0.33
COL12A1Q99715 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
COL12A1Q99715 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.99□□□□□ -0.33
COL12A1Q99715 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC12.99□□□□□ -0.33
COL12A1Q99715 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.99□□□□□ -0.33
COL12A1Q99715 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.99□□□□□ -0.33
COL12A1Q99715 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC12.99□□□□□ -0.33
COL12A1Q99715 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
COL12A1Q99715 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms