Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
VPS13AQ96RL7 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 RPSAP15-201ENST00000448168 861 ntBASIC14.69□□□□□ -0.06
VPS13AQ96RL7 AC063952.3-201ENST00000467756 308 ntBASIC14.69□□□□□ -0.06
VPS13AQ96RL7 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 AC099398.1-201ENST00000567919 2776 ntBASIC14.69□□□□□ -0.06
VPS13AQ96RL7 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 AC093826.1-201ENST00000508655 993 ntBASIC14.69□□□□□ -0.06
VPS13AQ96RL7 MED11-202ENST00000573708 802 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 AC009145.4-201ENST00000625119 1294 ntBASIC14.69□□□□□ -0.06
VPS13AQ96RL7 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS13AQ96RL7 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 AC106827.1-201ENST00000366454 431 ntBASIC14.68□□□□□ -0.06
VPS13AQ96RL7 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 EMC4-208ENST00000559078 599 ntTSL 3 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 AC008972.2-201ENST00000606587 494 ntBASIC14.68□□□□□ -0.06
VPS13AQ96RL7 AC002472.3-201ENST00000640124 621 ntBASIC14.68□□□□□ -0.06
VPS13AQ96RL7 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 AC024909.3-201ENST00000611513 2257 ntBASIC14.68□□□□□ -0.06
VPS13AQ96RL7 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.68□□□□□ -0.06
VPS13AQ96RL7 FRMPD2B-201ENST00000431305 1347 ntBASIC14.68□□□□□ -0.06
VPS13AQ96RL7 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS13AQ96RL7 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AC023141.7-201ENST00000430646 407 ntBASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AC026434.2-201ENST00000506094 1078 ntBASIC14.67□□□□□ -0.06
VPS13AQ96RL7 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 MIR3180-2-201ENST00000581748 88 ntBASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS13AQ96RL7 AL138725.1-201ENST00000407347 1314 ntBASIC14.67□□□□□ -0.06
VPS13AQ96RL7 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms