Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS52Q8N1B4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AC025279.2-201ENST00000569730 653 ntBASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AC243960.2-201ENST00000600996 747 ntBASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AC084346.2-201ENST00000607097 949 ntBASIC16.62■□□□□ 0.25
VPS52Q8N1B4 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 LINC02228-204ENST00000642115 2962 ntBASIC16.62■□□□□ 0.25
VPS52Q8N1B4 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VPS52Q8N1B4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 AC099063.4-201ENST00000641099 1602 ntBASIC16.61■□□□□ 0.25
VPS52Q8N1B4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 AC023310.1-201ENST00000554836 735 ntBASIC16.61■□□□□ 0.25
VPS52Q8N1B4 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 AC091271.1-201ENST00000611877 1162 ntBASIC16.61■□□□□ 0.25
VPS52Q8N1B4 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS52Q8N1B4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 AC011477.6-201ENST00000604980 1927 ntBASIC16.6■□□□□ 0.25
VPS52Q8N1B4 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms