Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 BX539320.1-201ENST00000623759 877 ntBASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 MROH4P-201ENST00000431302 1578 ntBASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
NUP54Q7Z3B4 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 ACTG1P3-201ENST00000431775 1114 ntBASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 AC007389.4-201ENST00000454674 793 ntBASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 INE1-201ENST00000456273 945 ntBASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 AP001063.1-201ENST00000568332 529 ntBASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 AC009486.1-201ENST00000569860 813 ntBASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 AC012645.4-201ENST00000610691 1061 ntBASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.15□□□□□ -0.14
NUP54Q7Z3B4 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.15□□□□□ -0.15
NUP54Q7Z3B4 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 AL512384.1-201ENST00000406683 331 ntBASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 GHSR-202ENST00000427970 912 ntBASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 KRT17P7-201ENST00000451704 1104 ntBASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 RN7SL837P-201ENST00000463010 287 ntBASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.14□□□□□ -0.15
NUP54Q7Z3B4 AP001582.1-201ENST00000525856 295 ntBASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms