Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.13□□□□□ -0.31
ABCA4P78363 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
ABCA4P78363 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 AC104784.1-201ENST00000473096 294 ntBASIC13.13□□□□□ -0.31
ABCA4P78363 AC004066.1-201ENST00000502488 802 ntBASIC13.13□□□□□ -0.31
ABCA4P78363 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.13□□□□□ -0.31
ABCA4P78363 AC023310.1-201ENST00000554836 735 ntBASIC13.13□□□□□ -0.31
ABCA4P78363 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.13□□□□□ -0.31
ABCA4P78363 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
ABCA4P78363 AC112504.1-201ENST00000623415 1841 ntBASIC13.12□□□□□ -0.31
ABCA4P78363 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
ABCA4P78363 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
ABCA4P78363 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA4P78363 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA4P78363 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
ABCA4P78363 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA4P78363 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
ABCA4P78363 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA4P78363 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
ABCA4P78363 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
ABCA4P78363 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA4P78363 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
ABCA4P78363 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.12□□□□□ -0.31
ABCA4P78363 AC134698.3-201ENST00000523880 214 ntBASIC13.12□□□□□ -0.31
ABCA4P78363 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA4P78363 AC013355.1-201ENST00000562625 723 ntBASIC13.12□□□□□ -0.31
ABCA4P78363 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.12□□□□□ -0.31
ABCA4P78363 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA4P78363 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
ABCA4P78363 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.12□□□□□ -0.31
ABCA4P78363 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
ABCA4P78363 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA4P78363 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA4P78363 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.11□□□□□ -0.31
ABCA4P78363 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 FGFR3P5-201ENST00000564496 886 ntBASIC13.11□□□□□ -0.31
ABCA4P78363 SAMD11P1-201ENST00000571429 661 ntBASIC13.11□□□□□ -0.31
ABCA4P78363 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.11□□□□□ -0.31
ABCA4P78363 CU633904.3-201ENST00000624042 1029 ntBASIC13.11□□□□□ -0.31
ABCA4P78363 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA4P78363 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA4P78363 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA4P78363 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 AC132872.4-202ENST00000622924 2756 ntBASIC13.11□□□□□ -0.31
ABCA4P78363 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA4P78363 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA4P78363 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA4P78363 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA4P78363 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA4P78363 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA4P78363 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
ABCA4P78363 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC13.11□□□□□ -0.31
ABCA4P78363 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA4P78363 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA4P78363 CYP46A4P-201ENST00000414953 267 ntBASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms