Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.15□□□□□ -0.14
RNF4P78317 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.15□□□□□ -0.14
RNF4P78317 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.15□□□□□ -0.14
RNF4P78317 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.15□□□□□ -0.14
RNF4P78317 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.15□□□□□ -0.14
RNF4P78317 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.15□□□□□ -0.14
RNF4P78317 AL512343.1-201ENST00000605837 169 ntBASIC14.15□□□□□ -0.14
RNF4P78317 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
RNF4P78317 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
RNF4P78317 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 LRRC59-203ENST00000576448 1531 ntBASIC14.15□□□□□ -0.14
RNF4P78317 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 NORAD-201ENST00000565493 5339 ntBASIC14.15□□□□□ -0.14
RNF4P78317 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.15□□□□□ -0.14
RNF4P78317 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RNF4P78317 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
RNF4P78317 AL360270.3-201ENST00000609118 1348 ntBASIC14.15□□□□□ -0.15
RNF4P78317 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
RNF4P78317 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
RNF4P78317 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 BOLA2P3-201ENST00000404566 256 ntBASIC14.14□□□□□ -0.15
RNF4P78317 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.14□□□□□ -0.15
RNF4P78317 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
RNF4P78317 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.14□□□□□ -0.15
RNF4P78317 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.14□□□□□ -0.15
RNF4P78317 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
RNF4P78317 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
RNF4P78317 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 AC145423.3-201ENST00000615987 467 ntBASIC14.14□□□□□ -0.15
RNF4P78317 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
RNF4P78317 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
RNF4P78317 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
RNF4P78317 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.14□□□□□ -0.15
RNF4P78317 AL109954.1-202ENST00000564051 2148 ntBASIC14.14□□□□□ -0.15
RNF4P78317 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.14□□□□□ -0.15
RNF4P78317 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RNF4P78317 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 MROH4P-201ENST00000431302 1578 ntBASIC14.13□□□□□ -0.15
RNF4P78317 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.13□□□□□ -0.15
RNF4P78317 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 REXO1L5P-201ENST00000622260 2098 ntBASIC14.13□□□□□ -0.15
RNF4P78317 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RNF4P78317 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 AL359258.3-201ENST00000622910 2331 ntBASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms