Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGCS2P54868 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGCS2P54868 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGCS2P54868 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGCS2P54868 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGCS2P54868 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGCS2P54868 AL160314.3-201ENST00000556041 767 ntBASIC17.44■□□□□ 0.38
HMGCS2P54868 PRKXP1-201ENST00000561423 1122 ntBASIC17.44■□□□□ 0.38
HMGCS2P54868 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
HMGCS2P54868 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
HMGCS2P54868 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGCS2P54868 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 U62317.3-201ENST00000608319 855 ntBASIC17.44■□□□□ 0.38
HMGCS2P54868 AL136295.7-201ENST00000619226 1200 ntBASIC17.44■□□□□ 0.38
HMGCS2P54868 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGCS2P54868 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
HMGCS2P54868 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.44■□□□□ 0.38
HMGCS2P54868 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCS2P54868 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGCS2P54868 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HMGCS2P54868 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGCS2P54868 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGCS2P54868 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HMGCS2P54868 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HMGCS2P54868 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGCS2P54868 PUDPP3-201ENST00000445368 636 ntBASIC17.43■□□□□ 0.38
HMGCS2P54868 FTLP1-201ENST00000449155 526 ntBASIC17.43■□□□□ 0.38
HMGCS2P54868 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGCS2P54868 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC17.43■□□□□ 0.38
HMGCS2P54868 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGCS2P54868 MIR5572-201ENST00000583188 137 ntBASIC17.43■□□□□ 0.38
HMGCS2P54868 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGCS2P54868 MIR6727-201ENST00000620702 65 ntBASIC17.43■□□□□ 0.38
HMGCS2P54868 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGCS2P54868 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 AL118508.1-201ENST00000613502 2345 ntBASIC17.43■□□□□ 0.38
HMGCS2P54868 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
HMGCS2P54868 AC012508.2-201ENST00000567613 1472 ntBASIC17.43■□□□□ 0.38
HMGCS2P54868 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGCS2P54868 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.43■□□□□ 0.38
HMGCS2P54868 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCS2P54868 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HMGCS2P54868 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HMGCS2P54868 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
HMGCS2P54868 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGCS2P54868 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HMGCS2P54868 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HMGCS2P54868 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGCS2P54868 AL513523.2-202ENST00000427283 2040 ntBASIC17.42■□□□□ 0.38
HMGCS2P54868 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGCS2P54868 AL596276.2-201ENST00000447525 331 ntBASIC17.42■□□□□ 0.38
HMGCS2P54868 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
HMGCS2P54868 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGCS2P54868 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
HMGCS2P54868 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGCS2P54868 SNORD3B-2-202ENST00000571722 791 ntBASIC17.42■□□□□ 0.38
HMGCS2P54868 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCS2P54868 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
HMGCS2P54868 AL353726.2-201ENST00000623259 884 ntBASIC17.42■□□□□ 0.38
HMGCS2P54868 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HMGCS2P54868 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms