Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.04□□□□□ -0.16
RFC3P40938 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.04□□□□□ -0.16
RFC3P40938 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RFC3P40938 GNRHR2-203ENST00000581100 1187 ntBASIC14.04□□□□□ -0.16
RFC3P40938 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.04□□□□□ -0.16
RFC3P40938 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.04□□□□□ -0.16
RFC3P40938 AL354718.3-201ENST00000616414 581 ntBASIC14.04□□□□□ -0.16
RFC3P40938 BX539320.1-201ENST00000623759 877 ntBASIC14.04□□□□□ -0.16
RFC3P40938 CR382287.1-201ENST00000623954 586 ntBASIC14.04□□□□□ -0.16
RFC3P40938 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.04□□□□□ -0.16
RFC3P40938 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.04□□□□□ -0.16
RFC3P40938 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.04□□□□□ -0.16
RFC3P40938 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.04□□□□□ -0.16
RFC3P40938 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
RFC3P40938 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.04□□□□□ -0.16
RFC3P40938 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RFC3P40938 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.03□□□□□ -0.16
RFC3P40938 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 FAM86MP-201ENST00000340703 885 ntBASIC14.03□□□□□ -0.16
RFC3P40938 RNU1-114P-201ENST00000365297 166 ntBASIC14.03□□□□□ -0.16
RFC3P40938 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.03□□□□□ -0.16
RFC3P40938 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.03□□□□□ -0.16
RFC3P40938 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
RFC3P40938 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.03□□□□□ -0.16
RFC3P40938 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.03□□□□□ -0.16
RFC3P40938 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 AC026954.1-201ENST00000429771 1293 ntBASIC14.03□□□□□ -0.16
RFC3P40938 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RFC3P40938 KRT18P25-201ENST00000508931 1278 ntBASIC14.03□□□□□ -0.16
RFC3P40938 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.03□□□□□ -0.16
RFC3P40938 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.03□□□□□ -0.16
RFC3P40938 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.03□□□□□ -0.16
RFC3P40938 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC14.03□□□□□ -0.16
RFC3P40938 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.03□□□□□ -0.16
RFC3P40938 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.03□□□□□ -0.16
RFC3P40938 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
RFC3P40938 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.03□□□□□ -0.16
RFC3P40938 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.03□□□□□ -0.16
RFC3P40938 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.03□□□□□ -0.16
RFC3P40938 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
RFC3P40938 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RFC3P40938 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
RFC3P40938 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RFC3P40938 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RFC3P40938 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
RFC3P40938 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RFC3P40938 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RFC3P40938 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RFC3P40938 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RFC3P40938 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RFC3P40938 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RFC3P40938 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.02□□□□□ -0.16
RFC3P40938 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RFC3P40938 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.02□□□□□ -0.16
RFC3P40938 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
RFC3P40938 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.02□□□□□ -0.17
RFC3P40938 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RFC3P40938 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RFC3P40938 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.02□□□□□ -0.17
RFC3P40938 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.02□□□□□ -0.17
RFC3P40938 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
RFC3P40938 KRT90P-201ENST00000549264 1064 ntBASIC14.02□□□□□ -0.17
RFC3P40938 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.02□□□□□ -0.17
RFC3P40938 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms