Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A5P29400 FO393412.1-201ENST00000619841 382 ntBASIC17.8■□□□□ 0.44
COL4A5P29400 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL4A5P29400 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A5P29400 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL4A5P29400 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A5P29400 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A5P29400 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A5P29400 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 SERF2-206ENST00000409291 807 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A5P29400 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A5P29400 AC093909.3-201ENST00000504783 336 ntBASIC17.8■□□□□ 0.44
COL4A5P29400 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A5P29400 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A5P29400 EIF5AP2-201ENST00000585668 1047 ntBASIC17.8■□□□□ 0.44
COL4A5P29400 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A5P29400 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL4A5P29400 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A5P29400 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A5P29400 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A5P29400 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A5P29400 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A5P29400 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A5P29400 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A5P29400 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A5P29400 AL354861.1-201ENST00000445213 355 ntBASIC17.79■□□□□ 0.44
COL4A5P29400 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A5P29400 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A5P29400 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
COL4A5P29400 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A5P29400 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A5P29400 AC012073.1-201ENST00000606114 1108 ntBASIC17.79■□□□□ 0.44
COL4A5P29400 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 AC138466.5-201ENST00000624002 808 ntBASIC17.79■□□□□ 0.44
COL4A5P29400 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A5P29400 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A5P29400 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A5P29400 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL4A5P29400 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 MARK2P16-201ENST00000605714 1723 ntBASIC17.78■□□□□ 0.44
COL4A5P29400 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A5P29400 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL4A5P29400 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
COL4A5P29400 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A5P29400 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A5P29400 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL4A5P29400 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL4A5P29400 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.78■□□□□ 0.44
COL4A5P29400 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC17.78■□□□□ 0.44
COL4A5P29400 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
COL4A5P29400 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A5P29400 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.78■□□□□ 0.44
COL4A5P29400 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 AL513523.2-202ENST00000427283 2040 ntBASIC17.78■□□□□ 0.44
COL4A5P29400 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A5P29400 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.77■□□□□ 0.44
COL4A5P29400 HLA-DMA-203ENST00000395305 777 ntBASIC17.77■□□□□ 0.44
COL4A5P29400 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A5P29400 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC17.77■□□□□ 0.44
COL4A5P29400 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms