Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.01■□□□□ 0.47
HMGB1P09429 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HMGB1P09429 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC18.01■□□□□ 0.47
HMGB1P09429 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 AC007292.2-201ENST00000593524 1812 ntBASIC18■□□□□ 0.47
HMGB1P09429 SF1-209ENST00000433274 2317 ntTSL 2 BASIC18■□□□□ 0.47
HMGB1P09429 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
HMGB1P09429 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18■□□□□ 0.47
HMGB1P09429 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
HMGB1P09429 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18■□□□□ 0.47
HMGB1P09429 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18■□□□□ 0.47
HMGB1P09429 ELK1P1-201ENST00000485699 580 ntBASIC18■□□□□ 0.47
HMGB1P09429 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18■□□□□ 0.47
HMGB1P09429 HNRNPA1P13-201ENST00000510646 963 ntBASIC18■□□□□ 0.47
HMGB1P09429 AP001582.1-201ENST00000525856 295 ntBASIC18■□□□□ 0.47
HMGB1P09429 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18■□□□□ 0.47
HMGB1P09429 AC140912.1-201ENST00000577171 1054 ntBASIC18■□□□□ 0.47
HMGB1P09429 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18■□□□□ 0.47
HMGB1P09429 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
HMGB1P09429 CICP14-201ENST00000629111 2732 ntBASIC18■□□□□ 0.47
HMGB1P09429 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
HMGB1P09429 AL137783.1-201ENST00000623494 1896 ntBASIC18■□□□□ 0.47
HMGB1P09429 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HMGB1P09429 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18■□□□□ 0.47
HMGB1P09429 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HMGB1P09429 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC18■□□□□ 0.47
HMGB1P09429 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
HMGB1P09429 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGB1P09429 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB1P09429 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB1P09429 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGB1P09429 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC17.99■□□□□ 0.47
HMGB1P09429 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB1P09429 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.99■□□□□ 0.47
HMGB1P09429 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 ACKR1-201ENST00000368121 1240 ntBASIC17.99■□□□□ 0.47
HMGB1P09429 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
HMGB1P09429 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
HMGB1P09429 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGB1P09429 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.99■□□□□ 0.47
HMGB1P09429 TERF1P3-201ENST00000505638 1227 ntBASIC17.99■□□□□ 0.47
HMGB1P09429 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HMGB1P09429 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGB1P09429 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGB1P09429 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 AP005019.2-201ENST00000615104 511 ntBASIC17.99■□□□□ 0.47
HMGB1P09429 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
HMGB1P09429 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.99■□□□□ 0.47
HMGB1P09429 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
HMGB1P09429 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HMGB1P09429 AC018442.1-201ENST00000421439 2061 ntBASIC17.99■□□□□ 0.47
HMGB1P09429 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HMGB1P09429 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms