Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 AL139099.5-201ENST00000635274 300 ntBASIC17.89■□□□□ 0.45
HLA-DOAP06340 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DOAP06340 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.89■□□□□ 0.45
HLA-DOAP06340 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.88■□□□□ 0.45
HLA-DOAP06340 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 CHMP1AP1-201ENST00000445563 662 ntBASIC17.88■□□□□ 0.45
HLA-DOAP06340 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 AC091804.1-201ENST00000486888 567 ntBASIC17.88■□□□□ 0.45
HLA-DOAP06340 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 KLK11-210ENST00000600362 759 ntTSL 3 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 AP001002.3-201ENST00000623482 206 ntBASIC17.88■□□□□ 0.45
HLA-DOAP06340 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.88■□□□□ 0.45
HLA-DOAP06340 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DOAP06340 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 AC004945.1-201ENST00000416738 983 ntBASIC17.87■□□□□ 0.45
HLA-DOAP06340 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.87■□□□□ 0.45
HLA-DOAP06340 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 AP000593.2-201ENST00000542775 1433 ntBASIC17.87■□□□□ 0.45
HLA-DOAP06340 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 AL359258.3-201ENST00000622910 2331 ntBASIC17.87■□□□□ 0.45
HLA-DOAP06340 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DOAP06340 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.87■□□□□ 0.45
HLA-DOAP06340 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DOAP06340 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 AC067930.6-201ENST00000623257 4947 ntBASIC17.86■□□□□ 0.45
HLA-DOAP06340 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.86■□□□□ 0.45
HLA-DOAP06340 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms