Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL3A1P02461 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 PTPA-218ENST00000435132 618 ntTSL 2 BASIC19.76■□□□□ 0.75
COL3A1P02461 RNMTL1P1-201ENST00000454103 560 ntBASIC19.76■□□□□ 0.75
COL3A1P02461 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.76■□□□□ 0.75
COL3A1P02461 AC126915.1-201ENST00000522847 1038 ntBASIC19.76■□□□□ 0.75
COL3A1P02461 SDHD-202ENST00000525291 790 ntTSL 3 BASIC19.76■□□□□ 0.75
COL3A1P02461 NKG7-204ENST00000595217 816 ntTSL 2 BASIC19.76■□□□□ 0.75
COL3A1P02461 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
COL3A1P02461 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.76■□□□□ 0.75
COL3A1P02461 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC19.76■□□□□ 0.75
COL3A1P02461 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL3A1P02461 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.76■□□□□ 0.75
COL3A1P02461 TNRC18P2-201ENST00000417666 2714 ntBASIC19.76■□□□□ 0.75
COL3A1P02461 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC19.75■□□□□ 0.75
COL3A1P02461 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC19.75■□□□□ 0.75
COL3A1P02461 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL3A1P02461 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL3A1P02461 AGER-203ENST00000375065 665 ntTSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 PTPA-215ENST00000432124 567 ntTSL 4 BASIC19.75■□□□□ 0.75
COL3A1P02461 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC19.75■□□□□ 0.75
COL3A1P02461 AL022328.3-201ENST00000607943 679 ntBASIC19.75■□□□□ 0.75
COL3A1P02461 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 RPL35-206ENST00000629845 340 ntTSL 5 BASIC19.75■□□□□ 0.75
COL3A1P02461 AL139099.5-201ENST00000635274 300 ntBASIC19.75■□□□□ 0.75
COL3A1P02461 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC19.75■□□□□ 0.75
COL3A1P02461 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL3A1P02461 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 FGD5P1-202ENST00000614866 2498 ntBASIC19.75■□□□□ 0.75
COL3A1P02461 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL3A1P02461 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL3A1P02461 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 AL008718.2-201ENST00000609206 1313 ntBASIC19.75■□□□□ 0.75
COL3A1P02461 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL3A1P02461 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL3A1P02461 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL3A1P02461 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC19.75■□□□□ 0.75
COL3A1P02461 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC19.75■□□□□ 0.75
COL3A1P02461 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL3A1P02461 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL3A1P02461 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
COL3A1P02461 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
COL3A1P02461 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC19.74■□□□□ 0.75
COL3A1P02461 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.74■□□□□ 0.75
COL3A1P02461 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.74■□□□□ 0.75
COL3A1P02461 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC19.74■□□□□ 0.75
COL3A1P02461 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.74■□□□□ 0.75
COL3A1P02461 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC19.74■□□□□ 0.75
COL3A1P02461 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 AL160314.3-201ENST00000556041 767 ntBASIC19.74■□□□□ 0.75
COL3A1P02461 CSH2-206ENST00000560142 749 ntTSL 5 BASIC19.74■□□□□ 0.75
COL3A1P02461 AC005962.1-201ENST00000584100 773 ntBASIC19.74■□□□□ 0.75
COL3A1P02461 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.74■□□□□ 0.75
COL3A1P02461 KRT8P29-201ENST00000420409 1371 ntBASIC19.74■□□□□ 0.75
COL3A1P02461 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
COL3A1P02461 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COL3A1P02461 AC018529.2-202ENST00000611482 3087 ntBASIC19.74■□□□□ 0.75
COL3A1P02461 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC19.74■□□□□ 0.75
COL3A1P02461 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC19.74■□□□□ 0.75
COL3A1P02461 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL3A1P02461 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL3A1P02461 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC19.74■□□□□ 0.75
COL3A1P02461 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
COL3A1P02461 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 MRPL37P1-201ENST00000592451 1337 ntBASIC19.74■□□□□ 0.75
COL3A1P02461 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL3A1P02461 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 LINC00554-201ENST00000564841 3011 ntBASIC19.74■□□□□ 0.75
COL3A1P02461 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL3A1P02461 MBLAC2-202ENST00000514906 1936 ntBASIC19.74■□□□□ 0.75
COL3A1P02461 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC19.74■□□□□ 0.75
COL3A1P02461 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL3A1P02461 DPM3-202ENST00000368399 517 ntBASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms