Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.13■□□□□ 0.17
RTN3O95197 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.13■□□□□ 0.17
RTN3O95197 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.13■□□□□ 0.17
RTN3O95197 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.13■□□□□ 0.17
RTN3O95197 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.13■□□□□ 0.17
RTN3O95197 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.13■□□□□ 0.17
RTN3O95197 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.13■□□□□ 0.17
RTN3O95197 MIR6775-201ENST00000617557 69 ntBASIC16.13■□□□□ 0.17
RTN3O95197 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.13■□□□□ 0.17
RTN3O95197 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.13■□□□□ 0.17
RTN3O95197 COX11-210ENST00000639671 696 ntBASIC16.13■□□□□ 0.17
RTN3O95197 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.13■□□□□ 0.17
RTN3O95197 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RTN3O95197 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.13■□□□□ 0.17
RTN3O95197 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
RTN3O95197 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.13■□□□□ 0.17
RTN3O95197 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.13■□□□□ 0.17
RTN3O95197 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RTN3O95197 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.13■□□□□ 0.17
RTN3O95197 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.13■□□□□ 0.17
RTN3O95197 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RTN3O95197 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 AC020658.6-201ENST00000623564 1870 ntBASIC16.12■□□□□ 0.17
RTN3O95197 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 RNU1-114P-201ENST00000365297 166 ntBASIC16.12■□□□□ 0.17
RTN3O95197 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.12■□□□□ 0.17
RTN3O95197 AC104457.1-201ENST00000401024 814 ntBASIC16.12■□□□□ 0.17
RTN3O95197 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.12■□□□□ 0.17
RTN3O95197 RPL7P3-201ENST00000441388 714 ntBASIC16.12■□□□□ 0.17
RTN3O95197 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 KRT223P-202ENST00000449164 1292 ntBASIC16.12■□□□□ 0.17
RTN3O95197 CTBP2P5-201ENST00000454986 1264 ntBASIC16.12■□□□□ 0.17
RTN3O95197 SNX29P1-201ENST00000548357 1007 ntBASIC16.12■□□□□ 0.17
RTN3O95197 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.12■□□□□ 0.17
RTN3O95197 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RTN3O95197 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
RTN3O95197 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.11■□□□□ 0.17
RTN3O95197 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
RTN3O95197 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RTN3O95197 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms