Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
CACNA1FO60840 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CACNA1FO60840 AC004898.1-201ENST00000451057 766 ntBASIC18.83■□□□□ 0.61
CACNA1FO60840 MIR4525-201ENST00000580000 75 ntBASIC18.83■□□□□ 0.61
CACNA1FO60840 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CACNA1FO60840 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CACNA1FO60840 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CACNA1FO60840 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CACNA1FO60840 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
CACNA1FO60840 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC18.83■□□□□ 0.6
CACNA1FO60840 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CACNA1FO60840 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CACNA1FO60840 CICP14-201ENST00000629111 2732 ntBASIC18.83■□□□□ 0.6
CACNA1FO60840 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC18.83■□□□□ 0.6
CACNA1FO60840 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CACNA1FO60840 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC18.83■□□□□ 0.6
CACNA1FO60840 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.83■□□□□ 0.6
CACNA1FO60840 SDCCAG3P2-201ENST00000326105 1023 ntBASIC18.82■□□□□ 0.6
CACNA1FO60840 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC18.82■□□□□ 0.6
CACNA1FO60840 AC044849.1-201ENST00000519737 1188 ntBASIC18.82■□□□□ 0.6
CACNA1FO60840 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC18.82■□□□□ 0.6
CACNA1FO60840 DUX4L46-201ENST00000566845 751 ntBASIC18.82■□□□□ 0.6
CACNA1FO60840 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC18.82■□□□□ 0.6
CACNA1FO60840 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 AC018529.2-202ENST00000611482 3087 ntBASIC18.82■□□□□ 0.6
CACNA1FO60840 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CACNA1FO60840 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CACNA1FO60840 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CACNA1FO60840 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC18.82■□□□□ 0.6
CACNA1FO60840 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CACNA1FO60840 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC18.82■□□□□ 0.6
CACNA1FO60840 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.82■□□□□ 0.6
CACNA1FO60840 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
CACNA1FO60840 AL160314.3-201ENST00000556041 767 ntBASIC18.82■□□□□ 0.6
CACNA1FO60840 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC18.82■□□□□ 0.6
CACNA1FO60840 MIR6869-201ENST00000619434 62 ntBASIC18.82■□□□□ 0.6
CACNA1FO60840 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CACNA1FO60840 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CACNA1FO60840 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CACNA1FO60840 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CACNA1FO60840 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.81■□□□□ 0.6
CACNA1FO60840 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
CACNA1FO60840 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CACNA1FO60840 GAS5-209ENST00000430245 723 ntTSL 3 BASIC18.81■□□□□ 0.6
CACNA1FO60840 ACTBP11-201ENST00000436287 1126 ntBASIC18.81■□□□□ 0.6
CACNA1FO60840 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC18.81■□□□□ 0.6
CACNA1FO60840 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.81■□□□□ 0.6
CACNA1FO60840 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC18.81■□□□□ 0.6
CACNA1FO60840 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18.81■□□□□ 0.6
CACNA1FO60840 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
CACNA1FO60840 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CACNA1FO60840 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CACNA1FO60840 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC18.81■□□□□ 0.6
CACNA1FO60840 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC18.81■□□□□ 0.6
CACNA1FO60840 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 CSH2-206ENST00000560142 749 ntTSL 5 BASIC18.81■□□□□ 0.6
CACNA1FO60840 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CACNA1FO60840 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CACNA1FO60840 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CACNA1FO60840 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms