Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
HDAC3O15379 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC3O15379 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC3O15379 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC3O15379 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HDAC3O15379 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC3O15379 AC055811.4-201ENST00000624039 1754 ntBASIC14.9□□□□□ -0.02
HDAC3O15379 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HDAC3O15379 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HDAC3O15379 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
HDAC3O15379 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HDAC3O15379 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
HDAC3O15379 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 AC015922.1-201ENST00000421102 1152 ntBASIC14.9□□□□□ -0.02
HDAC3O15379 KRT18P32-201ENST00000424695 1287 ntBASIC14.9□□□□□ -0.02
HDAC3O15379 HTR5BP-201ENST00000430851 1154 ntBASIC14.9□□□□□ -0.02
HDAC3O15379 MTND6P24-201ENST00000440466 518 ntBASIC14.9□□□□□ -0.02
HDAC3O15379 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.9□□□□□ -0.02
HDAC3O15379 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HDAC3O15379 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.9□□□□□ -0.02
HDAC3O15379 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 AC022145.2-201ENST00000598203 171 ntBASIC14.9□□□□□ -0.02
HDAC3O15379 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC14.9□□□□□ -0.02
HDAC3O15379 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.9□□□□□ -0.02
HDAC3O15379 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 AC105339.1-204ENST00000636249 355 ntBASIC14.9□□□□□ -0.02
HDAC3O15379 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
HDAC3O15379 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.9□□□□□ -0.02
HDAC3O15379 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HDAC3O15379 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HDAC3O15379 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC3O15379 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC3O15379 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HDAC3O15379 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.89□□□□□ -0.03
HDAC3O15379 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HDAC3O15379 AL359881.3-201ENST00000602640 1721 ntBASIC14.89□□□□□ -0.03
HDAC3O15379 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.89□□□□□ -0.03
HDAC3O15379 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HDAC3O15379 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.89□□□□□ -0.03
HDAC3O15379 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
HDAC3O15379 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC3O15379 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms